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    Poc5 POC5 centriolar protein [ Mus musculus (house mouse) ]

    Gene ID: 67463, updated on 29-May-2018

    Summary

    Official Symbol
    Poc5provided by MGI
    Official Full Name
    POC5 centriolar proteinprovided by MGI
    Primary source
    MGI:MGI:1914713
    See related
    Ensembl:ENSMUSG00000021671
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AV144706; 1200014M14Rik
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 5.2), whole brain E14.5 (RPKM 5.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See Poc5 in Genome Data Viewer
    Location:
    13; 13 D1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (96388294..96417211)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (97158249..97185542)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene predicted gene 29543 Neighboring gene SNF8, ESCRT-II complex subunit, homolog pseudogene Neighboring gene ankyrin repeat and death domain containing 1B Neighboring gene polymerase (DNA directed), kappa Neighboring gene collagen, type IV, alpha 3 (Goodpasture antigen) binding protein Neighboring gene predicted gene, 46436

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    centrosomal protein POC5
    Names
    POC5 centriolar protein homolog
    protein of centriole 5

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026173.3NP_080449.1  centrosomal protein POC5

      See identical proteins and their annotated locations for NP_080449.1

      Status: VALIDATED

      Source sequence(s)
      AK004769, AK150656
      Consensus CDS
      CCDS26703.1
      UniProtKB/Swiss-Prot
      Q9DBS8
      Related
      ENSMUSP00000096898.4, ENSMUST00000099295.5
      Conserved Domains (2) summary
      TIGR02168
      Location:176377
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR03895
      Location:346504
      protease_PatA; cyanobactin maturation protease, PatA/PatG family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      96388294..96417211
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006517751.3XP_006517814.1  centrosomal protein POC5 isoform X1

      Conserved Domains (2) summary
      TIGR02168
      Location:150351
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR03895
      Location:320478
      protease_PatA; cyanobactin maturation protease, PatA/PatG family

    RNA

    1. XR_001780803.1 RNA Sequence

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