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    Cylc1 cylicin, basic protein of sperm head cytoskeleton 1 [ Mus musculus (house mouse) ]

    Gene ID: 67407, updated on 8-Dec-2018

    Summary

    Official Symbol
    Cylc1provided by MGI
    Official Full Name
    cylicin, basic protein of sperm head cytoskeleton 1provided by MGI
    Primary source
    MGI:MGI:1914657
    See related
    Ensembl:ENSMUSG00000073001
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930401M13Rik
    Expression
    Restricted expression toward testis adult (RPKM 1.2) See more
    Orthologs

    Genomic context

    See Cylc1 in Genome Data Viewer
    Location:
    X; X E1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) X NC_000086.7 (111110418..111125961)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (108305757..108319213)

    Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene baculoviral IAP repeat-containing 6 pseudogene Neighboring gene POU domain, class 3, transcription factor 4 Neighboring gene developmental pluripotency associated 5 pseudogene Neighboring gene nuclear encoded tRNA arginine 4 (anticodon CCT)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    acrosomal matrix ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026134.2NP_080410.2  cylicin-1

      See identical proteins and their annotated locations for NP_080410.2

      Status: PROVISIONAL

      Source sequence(s)
      AK015038, AK015303, CAAA01221831
      Consensus CDS
      CCDS41103.1
      UniProtKB/TrEMBL
      G3X9R0, Q9CUM9
      Related
      ENSMUSP00000098840.2, ENSMUST00000101282.2
      Conserved Domains (1) summary
      pfam15241
      Location:26131
      Cylicin_N; Cylicin N-terminus

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000086.7 Reference GRCm38.p4 C57BL/6J

      Range
      111110418..111125961
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528264.1XP_006528327.1  cylicin-1 isoform X1

      UniProtKB/TrEMBL
      A0A1B0GR13
      Related
      ENSMUSP00000147334.1, ENSMUST00000210720.1
      Conserved Domains (1) summary
      pfam15241
      Location:26131
      Cylicin_N; Cylicin N-terminus
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