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    Carnmt1 carnosine N-methyltransferase 1 [ Mus musculus (house mouse) ]

    Gene ID: 67383, updated on 31-Jan-2019

    Summary

    Official Symbol
    Carnmt1provided by MGI
    Official Full Name
    carnosine N-methyltransferase 1provided by MGI
    Primary source
    MGI:MGI:1914633
    See related
    Ensembl:ENSMUSG00000024726
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2410127L17Rik
    Expression
    Ubiquitous expression in ovary adult (RPKM 5.9), liver E14 (RPKM 5.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See Carnmt1 in Genome Data Viewer
    Location:
    19 B; 19
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (18670734..18707201)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (18745270..18779282)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene osteoclast stimulating factor 1 Neighboring gene nicotinamide riboside kinase 1 Neighboring gene RIKEN cDNA D030056L22 gene Neighboring gene predicted gene, 41814 Neighboring gene transient receptor potential cation channel, subfamily M, member 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    S-adenosylmethionine-dependent methyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    carnosine N-methyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    carnosine N-methyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    carnosine metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    carnosine metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    methylation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    carnosine N-methyltransferase
    Names
    UPF0586 protein C9orf41 homolog
    NP_080396.2
    XP_006527356.2
    XP_006527357.1
    XP_006527358.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026120.4NP_080396.2  carnosine N-methyltransferase

      See identical proteins and their annotated locations for NP_080396.2

      Status: VALIDATED

      Source sequence(s)
      AI509964, AK004202, AK010784, BB656580, BQ748475
      Consensus CDS
      CCDS29689.1
      UniProtKB/Swiss-Prot
      Q80UY1
      Related
      ENSMUSP00000025632.9, ENSMUST00000025632.9
      Conserved Domains (1) summary
      pfam07942
      Location:135400
      N2227; N2227-like protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      18670734..18707201
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006527293.3XP_006527356.2  carnosine N-methyltransferase isoform X1

      Conserved Domains (1) summary
      pfam07942
      Location:211409
      N2227; N2227-like protein
    2. XM_006527294.2XP_006527357.1  carnosine N-methyltransferase isoform X2

      Conserved Domains (1) summary
      pfam07942
      Location:90355
      N2227; N2227-like protein
    3. XM_006527295.2XP_006527358.1  carnosine N-methyltransferase isoform X3

      Conserved Domains (1) summary
      pfam07942
      Location:83348
      N2227; N2227-like protein
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