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    Fam69a family with sequence similarity 69, member A [ Mus musculus (house mouse) ]

    Gene ID: 67266, updated on 27-Jan-2018

    Summary

    Official Symbol
    Fam69aprovided by MGI
    Official Full Name
    family with sequence similarity 69, member Aprovided by MGI
    Primary source
    MGI:MGI:1914516
    See related
    Ensembl:ENSMUSG00000029270 Vega:OTTMUSG00000028903
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI315274; 2900024C23Rik
    Expression
    Broad expression in CNS E18 (RPKM 13.4), CNS E14 (RPKM 9.4) and 24 other tissues See more
    Orthologs

    Genomic context

    See Fam69a in Genome Data Viewer
    Location:
    5 F; 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (107908042..107987077, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (108337061..108416096, complement)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene ecotropic viral integration site 5 Neighboring gene ubiquitin-conjugating enzyme E2D 2B Neighboring gene predicted gene, 42149 Neighboring gene ribosomal protein L5 Neighboring gene predicted gene, 42150 Neighboring gene ribosomal protein S19, pseudogene 8

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC144843

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026062.4NP_080338.1  protein FAM69A

      See identical proteins and their annotated locations for NP_080338.1

      Status: VALIDATED

      Source sequence(s)
      AK048979, AK053273, BY131147, DT926079
      Consensus CDS
      CCDS39200.1
      UniProtKB/Swiss-Prot
      Q9D6I7
      Related
      ENSMUSP00000031198.4, OTTMUSP00000036738, ENSMUST00000031198.10, OTTMUST00000071617
      Conserved Domains (2) summary
      pfam12260
      Location:194396
      PIP49_C; Protein-kinase domain of FAM69
      pfam14875
      Location:20176
      PIP49_N; N-term cysteine-rich ER, FAM69

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      107908042..107987077 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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