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    Rpl39 ribosomal protein L39 [ Mus musculus (house mouse) ]

    Gene ID: 67248, updated on 9-Sep-2018

    Summary

    Official Symbol
    Rpl39provided by MGI
    Official Full Name
    ribosomal protein L39provided by MGI
    Primary source
    MGI:MGI:1914498
    See related
    Ensembl:ENSMUSG00000079641 Vega:OTTMUSG00000017100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2810465O16Rik
    Expression
    Broad expression in liver E14 (RPKM 363.3), bladder adult (RPKM 355.7) and 21 other tissues See more
    Orthologs

    Genomic context

    See Rpl39 in Genome Data Viewer
    Location:
    X; X A3.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) X NC_000086.7 (37082518..37085222, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (34622515..34625179, complement)

    Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene predicted gene 15008 Neighboring gene septin 6 Neighboring gene sosondowah ankyrin repeat domain family member D Neighboring gene small nucleolar RNA, H/ACA box 69 Neighboring gene UPF3 regulator of nonsense transcripts homolog B (yeast) Neighboring gene NFKB activating protein Neighboring gene A kinase (PRKA) anchor protein 14

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    antibacterial humoral response ISO
    Inferred from Sequence Orthology
    more info
     
    antimicrobial humoral immune response mediated by antimicrobial peptide ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasmic translation ISO
    Inferred from Sequence Orthology
    more info
     
    defense response to Gram-positive bacterium ISO
    Inferred from Sequence Orthology
    more info
     
    innate immune response in mucosa ISO
    Inferred from Sequence Orthology
    more info
     
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    polysomal ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026055.2NP_080331.1  60S ribosomal protein L39

      Status: VALIDATED

      Source sequence(s)
      BY150278, BY705714
      Consensus CDS
      CCDS40927.1
      UniProtKB/Swiss-Prot
      P62892
      UniProtKB/TrEMBL
      Q505A8
      Related
      ENSMUSP00000110886.3, OTTMUSP00000018582, ENSMUST00000115231.3, OTTMUST00000041420
      Conserved Domains (1) summary
      pfam00832
      Location:950
      Ribosomal_L39; Ribosomal L39 protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000086.7 Reference GRCm38.p4 C57BL/6J

      Range
      37082518..37085222 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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