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    Resf1 retroelement silencing factor 1 [ Mus musculus (house mouse) ]

    Gene ID: 67246, updated on 28-Oct-2021

    Summary

    Official Symbol
    Resf1provided by MGI
    Official Full Name
    retroelement silencing factor 1provided by MGI
    Primary source
    MGI:MGI:1914496
    See related
    Ensembl:ENSMUSG00000032712
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    GET; AA536804; AU020969; 2810474O19Rik; 6720435I21Rik
    Expression
    Ubiquitous expression in bladder adult (RPKM 4.3), ovary adult (RPKM 3.6) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Resf1 in Genome Data Viewer
    Location:
    6; 6 G3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (149210907..149237161)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (149309409..149335663)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (149257936..149284185)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene electron transfer flavoprotein beta subunit lysine methyltransferase Neighboring gene antagonist of mitotic exit network 1 Neighboring gene predicted gene, 38930 Neighboring gene nucleus accumbens associated 1, BEN and BTB (POZ) domain containing pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA1551

    General protein information

    Preferred Names
    retroelement silencing factor 1
    Names
    likely orthologue of H. sapiens chromosome 12 open reading frame 35 (C12orf35)
    uncharacterized protein C12orf35 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001289661.1NP_001276590.1  retroelement silencing factor 1

      See identical proteins and their annotated locations for NP_001276590.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      AC163647, AK020121, BC139436, DV644998
      Consensus CDS
      CCDS20717.1
      UniProtKB/Swiss-Prot
      Q5DTW7
      UniProtKB/TrEMBL
      B2KFD2
      Related
      ENSMUSP00000098328.5, ENSMUST00000100765.11
      Conserved Domains (1) summary
      pfam15395
      Location:4521511
      DUF4617; Domain of unknown function (DUF4617)
    2. NM_001289662.1NP_001276591.1  retroelement silencing factor 1

      See identical proteins and their annotated locations for NP_001276591.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site and lacks an exon in the 5' UTR, compared to variant 1. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      AC163647, AK020121, BC139435, DV644998
      Consensus CDS
      CCDS20717.1
      UniProtKB/Swiss-Prot
      Q5DTW7
      UniProtKB/TrEMBL
      B2KFD2
      Related
      ENSMUSP00000140026.2, ENSMUST00000189932.7
      Conserved Domains (1) summary
      pfam15395
      Location:4521511
      DUF4617; Domain of unknown function (DUF4617)
    3. NM_026054.3NP_080330.1  retroelement silencing factor 1

      See identical proteins and their annotated locations for NP_080330.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an exon in the 5' UTR, compared to variant 1. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      AC163647, AK017376, AK020121, BC139436, DV644998
      Consensus CDS
      CCDS20717.1
      UniProtKB/Swiss-Prot
      Q5DTW7
      UniProtKB/TrEMBL
      B2KFD2
      Related
      ENSMUSP00000041180.7, ENSMUST00000046689.13
      Conserved Domains (1) summary
      pfam15395
      Location:4521511
      DUF4617; Domain of unknown function (DUF4617)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      149210907..149237161
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006507083.4XP_006507146.1  retroelement silencing factor 1 isoform X1

      See identical proteins and their annotated locations for XP_006507146.1

      UniProtKB/Swiss-Prot
      Q5DTW7
      UniProtKB/TrEMBL
      B2KFD2
      Conserved Domains (1) summary
      pfam15395
      Location:4521511
      DUF4617; Domain of unknown function (DUF4617)
    2. XM_006507081.5XP_006507144.1  retroelement silencing factor 1 isoform X1

      See identical proteins and their annotated locations for XP_006507144.1

      UniProtKB/Swiss-Prot
      Q5DTW7
      UniProtKB/TrEMBL
      B2KFD2
      Conserved Domains (1) summary
      pfam15395
      Location:4521511
      DUF4617; Domain of unknown function (DUF4617)
    3. XM_006507086.5XP_006507149.1  retroelement silencing factor 1 isoform X2

      See identical proteins and their annotated locations for XP_006507149.1

      Conserved Domains (1) summary
      pfam15395
      Location:4521470
      DUF4617; Domain of unknown function (DUF4617)
    4. XM_011241622.3XP_011239924.1  retroelement silencing factor 1 isoform X1

      See identical proteins and their annotated locations for XP_011239924.1

      UniProtKB/Swiss-Prot
      Q5DTW7
      UniProtKB/TrEMBL
      B2KFD2
      Conserved Domains (1) summary
      pfam15395
      Location:4521511
      DUF4617; Domain of unknown function (DUF4617)
    5. XM_036152270.1XP_036008163.1  retroelement silencing factor 1 isoform X1

      Conserved Domains (1) summary
      pfam15395
      Location:4521511
      DUF4617; Domain of unknown function (DUF4617)
    6. XM_006507084.4XP_006507147.1  retroelement silencing factor 1 isoform X1

      See identical proteins and their annotated locations for XP_006507147.1

      UniProtKB/Swiss-Prot
      Q5DTW7
      UniProtKB/TrEMBL
      B2KFD2
      Conserved Domains (1) summary
      pfam15395
      Location:4521511
      DUF4617; Domain of unknown function (DUF4617)
    7. XM_030255554.2XP_030111414.1  retroelement silencing factor 1 isoform X1

      Related
      ENSMUSP00000139660.2, ENSMUST00000189837.2
      Conserved Domains (1) summary
      pfam15395
      Location:4521511
      DUF4617; Domain of unknown function (DUF4617)
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