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    Zkscan14 zinc finger with KRAB and SCAN domains 14 [ Mus musculus (house mouse) ]

    Gene ID: 67235, updated on 23-Jun-2021

    Summary

    Official Symbol
    Zkscan14provided by MGI
    Official Full Name
    zinc finger with KRAB and SCAN domains 14provided by MGI
    Primary source
    MGI:MGI:1914485
    See related
    Ensembl:ENSMUSG00000029627
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Zfp9; Zfp99; Znf394; 2310046C23Rik; 2810437E14Rik
    Expression
    Ubiquitous expression in bladder adult (RPKM 2.2), cerebellum adult (RPKM 2.2) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Zkscan14 in Genome Data Viewer
    Location:
    5; 5 G2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (145131756..145140972, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (145194946..145204164, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (145955815..145962751, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene cleavage and polyadenylation specific factor 4 Neighboring gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2 Neighboring gene zinc finger with KRAB and SCAN domains 5 Neighboring gene zinc finger protein 655

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC117641

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    zinc finger protein 394
    Names
    zfp-94
    zinc finger protein 94
    zinc finger protein 99
    zinc finger protein with KRAB and SCAN domains 14

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023322.2NP_075811.2  zinc finger protein 394

      See identical proteins and their annotated locations for NP_075811.2

      Status: VALIDATED

      Source sequence(s)
      AI195146, AK013258, CJ072232
      Consensus CDS
      CCDS19860.1
      UniProtKB/Swiss-Prot
      Q9Z1D9
      Related
      ENSMUSP00000031632.9, ENSMUST00000031632.9
      Conserved Domains (8) summary
      smart00431
      Location:40151
      SCAN; leucine rich region
      cd07765
      Location:135173
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
      smart00349
      Location:135193
      KRAB; krueppel associated box
      COG5048
      Location:303484
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:329349
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:438460
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:40128
      SCAN; SCAN domain
      pfam13465
      Location:341366
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      145131756..145140972 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011241012.4XP_011239314.1  zinc finger protein 394 isoform X1

      Conserved Domains (4) summary
      smart00349
      Location:159
      KRAB; krueppel associated box
      COG5048
      Location:169350
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:195215
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:347371
      zf-H2C2_2; Zinc-finger double domain
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