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    Rrp15 ribosomal RNA processing 15 homolog (S. cerevisiae) [ Mus musculus (house mouse) ]

    Gene ID: 67223, updated on 12-Aug-2018

    Summary

    Official Symbol
    Rrp15provided by MGI
    Official Full Name
    ribosomal RNA processing 15 homolog (S. cerevisiae)provided by MGI
    Primary source
    MGI:MGI:1914473
    See related
    Ensembl:ENSMUSG00000001305 Vega:OTTMUSG00000034905
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2810430M08Rik; 5430437H21Rik
    Summary
    This gene encodes a protein similar to budding yeast Rrp15p. Rrp15p is a component of pre-60S ribosomal particles in budding yeast, and is required for the early maturation steps of the 60S subunit. The mouse genome contains at least one pseudogene on the X chromosome. [provided by RefSeq, Jul 2008]
    Expression
    Biased expression in CNS E11.5 (RPKM 28.7), liver E14 (RPKM 16.9) and 14 other tissues See more
    Orthologs

    Genomic context

    See Rrp15 in Genome Data Viewer
    Location:
    1; 1 H5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (186721086..186749358, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (188544965..188573237, complement)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 35546 Neighboring gene transforming growth factor, beta 2 Neighboring gene predicted gene, 35655 Neighboring gene RIKEN cDNA A430105J06 gene Neighboring gene RIKEN cDNA 1700023G09 gene Neighboring gene predicted gene, 39732

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    rRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    preribosome, large subunit precursor IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    RRP15-like protein
    Names
    ribosomal RNA-processing protein 15

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026041.2NP_080317.3  RRP15-like protein

      See identical proteins and their annotated locations for NP_080317.3

      Status: REVIEWED

      Source sequence(s)
      AK169088, CO043575
      Consensus CDS
      CCDS15602.1
      UniProtKB/Swiss-Prot
      Q9CYX7
      Related
      ENSMUSP00000001339.5, OTTMUSP00000048400, ENSMUST00000001339.5, OTTMUST00000088735
      Conserved Domains (1) summary
      pfam07890
      Location:101215
      Rrp15p; Rrp15p

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      186721086..186749358 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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