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    Cmtm6 CKLF-like MARVEL transmembrane domain containing 6 [ Mus musculus (house mouse) ]

    Gene ID: 67213, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cmtm6provided by MGI
    Official Full Name
    CKLF-like MARVEL transmembrane domain containing 6provided by MGI
    Primary source
    MGI:MGI:2447165
    See related
    Ensembl:ENSMUSG00000032434
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cklfsf6; AA536733; 2810051A14Rik
    Expression
    Ubiquitous expression in large intestine adult (RPKM 31.1), lung adult (RPKM 29.4) and 28 other tissues See more
    Orthologs

    Genomic context

    See Cmtm6 in Genome Data Viewer
    Location:
    9; 9 F3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (114731157..114749347)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (114640321..114658461)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene predicted gene 7780 Neighboring gene dynein cytoplasmic 1 light intermediate chain 1 Neighboring gene CKLF-like MARVEL transmembrane domain containing 7 Neighboring gene CKLF-like MARVEL transmembrane domain containing 8

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    endocytic recycling ISO
    Inferred from Sequence Orthology
    more info
     
    protein transport ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of protein stability ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    early endosome membrane ISO
    Inferred from Sequence Orthology
    more info
     
    endosome IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    recycling endosome membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    CKLF-like MARVEL transmembrane domain-containing protein 6
    Names
    chemokine-like factor super family 6
    chemokine-like factor superfamily 6
    chemokine-like factor superfamily member 6

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026036.3NP_080312.1  CKLF-like MARVEL transmembrane domain-containing protein 6

      See identical proteins and their annotated locations for NP_080312.1

      Status: PROVISIONAL

      Source sequence(s)
      AC161419
      Consensus CDS
      CCDS23596.1
      UniProtKB/Swiss-Prot
      Q9CZ69
      Related
      ENSMUSP00000035007.8, ENSMUST00000035007.9

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      114731157..114749347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006512242.2XP_006512305.1  CKLF-like MARVEL transmembrane domain-containing protein 6 isoform X1

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