Format

Send to:

Choose Destination
    • Showing Current items.

    Pfdn1 prefoldin 1 [ Mus musculus (house mouse) ]

    Gene ID: 67199, updated on 11-Sep-2018

    Summary

    Official Symbol
    Pfdn1provided by MGI
    Official Full Name
    prefoldin 1provided by MGI
    Primary source
    MGI:MGI:1914449
    See related
    Ensembl:ENSMUSG00000024346
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA408327; AU044714; 2700086I23Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 42.8), CNS E11.5 (RPKM 27.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Pfdn1 in Genome Data Viewer
    Location:
    18; 18 B2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (36403679..36454495, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (36563333..36614149, complement)

    Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41696 Neighboring gene cysteine-rich transmembrane module containing 1 Neighboring gene heparin-binding EGF-like growth factor Neighboring gene predicted gene, 41698

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1)  1 citation
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding involved in protein folding ISO
    Inferred from Sequence Orthology
    more info
     
    unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    B cell activation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    actin cytoskeleton organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cerebellum development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein folding IEA
    Inferred from Electronic Annotation
    more info
     
    telencephalon development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    prefoldin complex IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026027.3NP_080303.1  prefoldin subunit 1

      See identical proteins and their annotated locations for NP_080303.1

      Status: PROVISIONAL

      Source sequence(s)
      AC130714, AC147220
      Consensus CDS
      CCDS29152.1
      UniProtKB/TrEMBL
      Q9CQF7
      Related
      ENSMUSP00000025204.5, ENSMUST00000025204.5
      Conserved Domains (1) summary
      pfam01920
      Location:14117
      Prefoldin_2; Prefoldin subunit

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

      Range
      36403679..36454495 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center