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    Zmynd19 zinc finger, MYND domain containing 19 [ Mus musculus (house mouse) ]

    Gene ID: 67187, updated on 23-Jun-2021

    Summary

    Official Symbol
    Zmynd19provided by MGI
    Official Full Name
    zinc finger, MYND domain containing 19provided by MGI
    Primary source
    MGI:MGI:1914437
    See related
    Ensembl:ENSMUSG00000026974
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mizip; AA536891; AU014915; 2700064H14Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 9.2), CNS E11.5 (RPKM 8.7) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Zmynd19 in Genome Data Viewer
    Location:
    2; 2 A3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (24839789..24850882)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (24949777..24960870)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (24805322..24814933)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene euchromatic histone methyltransferase 1 Neighboring gene arrestin domain containing 1 Neighboring gene diphthamine biosynethesis 7 Neighboring gene mitochondrial ribosomal protein L41

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    zinc finger MYND domain-containing protein 19
    Names
    MCH-R1-interacting zinc finger protein
    melanin concentrating hormone receptor interacting zinc finger protein
    melanin-concentrating hormone receptor 1-interacting zinc finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026021.4NP_080297.1  zinc finger MYND domain-containing protein 19 isoform 1

      See identical proteins and their annotated locations for NP_080297.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes encodes the longer isoform (1).
      Source sequence(s)
      AK012484, AL732585, AL935039, CJ154709
      Consensus CDS
      CCDS15742.1
      UniProtKB/Swiss-Prot
      Q9CQG3
      Related
      ENSMUSP00000028350.4, ENSMUST00000028350.9
      Conserved Domains (2) summary
      pfam01753
      Location:174212
      zf-MYND; MYND finger
      cl00083
      Location:66105
      HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...
    2. NM_147179.1NP_671708.1  zinc finger MYND domain-containing protein 19 isoform 2

      See identical proteins and their annotated locations for NP_671708.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate 5' most exon which results in the use of a downstream AUG compared to variant 1. The encoded isoform (2) has a shorter N-terminus compared to isoform 1.
      Source sequence(s)
      AL732525, AL732585, AL935039
      Consensus CDS
      CCDS79745.1
      UniProtKB/Swiss-Prot
      Q9CQG3
      Related
      ENSMUSP00000141788.2, ENSMUST00000148042.3
      Conserved Domains (2) summary
      pfam01753
      Location:135173
      zf-MYND; MYND finger
      cl00083
      Location:2766
      HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      24839789..24850882
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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