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    Ctdnep1 CTD nuclear envelope phosphatase 1 [ Mus musculus (house mouse) ]

    Gene ID: 67181, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ctdnep1provided by MGI
    Official Full Name
    CTD nuclear envelope phosphatase 1provided by MGI
    Primary source
    MGI:MGI:1914431
    See related
    Ensembl:ENSMUSG00000018559
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Dullard; 2610507E10Rik
    Expression
    Ubiquitous expression in large intestine adult (RPKM 48.6), adrenal adult (RPKM 48.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ctdnep1 in Genome Data Viewer
    Location:
    11; 11 B3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (69981168..69990601)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (69794670..69804103)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene cofilin 1, non-muscle pseudogene Neighboring gene claudin 7 Neighboring gene elongator acetyltransferase complex subunit 5 Neighboring gene gamma-aminobutyric acid receptor associated protein Neighboring gene PHD finger protein 23

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
     
    phosphoprotein phosphatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein serine/threonine phosphatase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    gamete generation IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    gamete generation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    mesoderm development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    nuclear envelope organization ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of canonical Wnt signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of triglyceride biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    protein dephosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    protein localization to nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    Nem1-Spo7 phosphatase complex ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    lipid droplet ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear envelope ISO
    Inferred from Sequence Orthology
    more info
     
    nuclear membrane ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    CTD nuclear envelope phosphatase 1
    Names
    serine/threonine-protein phosphatase dullard
    NP_080293.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026017.2NP_080293.1  CTD nuclear envelope phosphatase 1

      See identical proteins and their annotated locations for NP_080293.1

      Status: PROVISIONAL

      Source sequence(s)
      AL596185
      Consensus CDS
      CCDS24927.1
      UniProtKB/Swiss-Prot
      Q3TP92
      Related
      ENSMUSP00000104234.1, ENSMUST00000108593.7
      Conserved Domains (1) summary
      TIGR02251
      Location:61229
      HIF-SF_euk; Dullard-like phosphatase domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      69981168..69990601
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCm38.p4 NOD/MrkTac

    Genomic

    1. NT_187026.1 Reference GRCm38.p4 NOD/MrkTac

      Range
      85658..95091
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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