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    Arl8b ADP-ribosylation factor-like 8B [ Mus musculus (house mouse) ]

    Gene ID: 67166, updated on 19-Mar-2019

    Summary

    Official Symbol
    Arl8bprovided by MGI
    Official Full Name
    ADP-ribosylation factor-like 8Bprovided by MGI
    Primary source
    MGI:MGI:1914416
    See related
    Ensembl:ENSMUSG00000030105
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    gie1; Arl10c; 2610313E07Rik; 3100002J04Rik
    Expression
    Ubiquitous expression in frontal lobe adult (RPKM 29.8), cortex adult (RPKM 29.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Arl8b in Genome Data Viewer
    Location:
    6; 6 E2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (108783059..108823723)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (108733053..108773717)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 0610040F04 gene Neighboring gene basic helix-loop-helix family, member e40 Neighboring gene predicted gene, 35359 Neighboring gene predicted gene, 35417 Neighboring gene ER degradation enhancer, mannosidase alpha-like 1 Neighboring gene histone H3.3-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    GDP binding ISO
    Inferred from Sequence Orthology
    more info
     
    GTP binding ISO
    Inferred from Sequence Orthology
    more info
     
    alpha-tubulin binding ISO
    Inferred from Sequence Orthology
    more info
     
    beta-tubulin binding ISO
    Inferred from Sequence Orthology
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    anterograde axonal transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    cell division IEA
    Inferred from Electronic Annotation
    more info
     
    chromosome segregation ISO
    Inferred from Sequence Orthology
    more info
     
    lysosome localization ISO
    Inferred from Sequence Orthology
    more info
     
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    axon IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    endosome IEA
    Inferred from Electronic Annotation
    more info
     
    lysosomal membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    colocalizes_with lysosomal membrane ISO
    Inferred from Sequence Orthology
    more info
     
    lysosome IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    midbody ISO
    Inferred from Sequence Orthology
    more info
     
    spindle midzone ISO
    Inferred from Sequence Orthology
    more info
     
    synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    synapse IEA
    Inferred from Electronic Annotation
    more info
     
    vacuolar membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    ADP-ribosylation factor-like protein 8B
    Names
    ADP-ribosylation factor-like 10C
    ADP-ribosylation factor-like protein 10C
    novel small G protein indispensable for equal chromosome segregation 1
    small G protein indispensable for equal chromosome segregation 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026011.3NP_080287.1  ADP-ribosylation factor-like protein 8B

      See identical proteins and their annotated locations for NP_080287.1

      Status: VALIDATED

      Source sequence(s)
      AC132443, AK144177, BY261755
      Consensus CDS
      CCDS39586.1
      UniProtKB/Swiss-Prot
      Q9CQW2
      Related
      ENSMUSP00000032196.6, ENSMUST00000032196.8
      Conserved Domains (1) summary
      cd04159
      Location:22180
      Arl10_like; Arf-like 9 (Arl9) and 10 (Arl10) GTPases

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      108783059..108823723
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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