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    Ccdc47 coiled-coil domain containing 47 [ Mus musculus (house mouse) ]

    Gene ID: 67163, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ccdc47provided by MGI
    Official Full Name
    coiled-coil domain containing 47provided by MGI
    Primary source
    MGI:MGI:1914413
    See related
    Ensembl:ENSMUSG00000078622
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    a; cal; asp4; C88307; calumin; 2610204L23Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 20.3), CNS E11.5 (RPKM 18.4) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Ccdc47 in Genome Data Viewer
    Location:
    11; 11 E1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (106090086..106107349, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (106199260..106216523, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (106060668..106077681, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene LIM domain containing 2 Neighboring gene predicted gene 10840 Neighboring gene STE20-related kinase adaptor alpha Neighboring gene DEAD box helicase 42 Neighboring gene FtsJ RNA methyltransferase homolog 3 (E. coli) Neighboring gene protease (prosome, macropain) 26S subunit, ATPase 5 Neighboring gene predicted gene, 23645

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables calcium ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables calcium ion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein folding chaperone ISO
    Inferred from Sequence Orthology
    more info
     
    enables ribosome binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in rough endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    PAT complex subunit CCDC47; coiled-coil domain-containing protein 47
    Names
    adipocyte-specific protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026009.2NP_080285.2  PAT complex subunit CCDC47 precursor

      See identical proteins and their annotated locations for NP_080285.2

      Status: VALIDATED

      Source sequence(s)
      AK011882, AK078812, AL596331, CJ157793
      Consensus CDS
      CCDS25551.1
      UniProtKB/Swiss-Prot
      Q9D024
      UniProtKB/TrEMBL
      Q0VBU4
      Related
      ENSMUSP00000002043.4, ENSMUST00000002043.10
      Conserved Domains (2) summary
      PRK05901
      Location:18115
      PRK05901; RNA polymerase sigma factor; Provisional
      pfam07946
      Location:135467
      DUF1682; Protein of unknown function (DUF1682)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      106090086..106107349 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030246238.1XP_030102098.1  coiled-coil domain-containing protein 47 isoform X1

      Conserved Domains (1) summary
      pfam07946
      Location:1326
      DUF1682; Protein of unknown function (DUF1682)
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