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    Psmd9 proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 [ Mus musculus (house mouse) ]

    Gene ID: 67151, updated on 23-Jun-2021

    Summary

    Official Symbol
    Psmd9provided by MGI
    Official Full Name
    proteasome (prosome, macropain) 26S subunit, non-ATPase, 9provided by MGI
    Primary source
    MGI:MGI:1914401
    See related
    Ensembl:ENSMUSG00000029440
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    P2; P27; Bridge; Bridge-1; 1500011J20Rik; 2610202L11Rik
    Expression
    Ubiquitous expression in liver E18 (RPKM 15.6), liver E14 (RPKM 13.6) and 28 other tissues See more
    Orthologs
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    Try the new Transcript table

    Genomic context

    See Psmd9 in Genome Data Viewer
    Location:
    5; 5 F
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (123366253..123388189)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (123228190..123250126)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (123678199..123700135)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene SET domain containing 1B Neighboring gene predicted gene, 54284 Neighboring gene 4-hydroxyphenylpyruvic acid dioxygenase Neighboring gene ribosomal protein L35A, pseudogene 6 Neighboring gene WD repeat domain 66 Neighboring gene predicted gene 15860 Neighboring gene B cell CLL/lymphoma 7A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables bHLH transcription factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables bHLH transcription factor binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    enables protein C-terminus binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables transcription coactivator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables transcription coactivator activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    part_of proteasome regulatory particle, base subcomplex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    26S proteasome non-ATPase regulatory subunit 9
    Names
    26S proteasome regulatory subunit p27

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026000.2NP_080276.2  26S proteasome non-ATPase regulatory subunit 9

      See identical proteins and their annotated locations for NP_080276.2

      Status: VALIDATED

      Source sequence(s)
      BC051930, BY128235
      Consensus CDS
      CCDS39266.1
      UniProtKB/Swiss-Prot
      Q9CR00
      Related
      ENSMUSP00000098295.5, ENSMUST00000100729.9
      Conserved Domains (2) summary
      cd00989
      Location:128204
      PDZ_metalloprotease; PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ ...
      cl21454
      Location:64151
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      123366253..123388189
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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