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    Rps10 ribosomal protein S10 [ Mus musculus (house mouse) ]

    Gene ID: 67097, updated on 26-Sep-2022

    Summary

    Official Symbol
    Rps10provided by MGI
    Official Full Name
    ribosomal protein S10provided by MGI
    Primary source
    MGI:MGI:1914347
    See related
    Ensembl:ENSMUSG00000052146 AllianceGenome:MGI:1914347
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2210402A09Rik
    Summary
    Predicted to enable tRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be located in cytosolic ribosome and nucleolus. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in several structures, including branchial arch; limb; maxillary process; sensory organ; and trunk somite. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 9. Orthologous to several human genes including RPS10 (ribosomal protein S10). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in liver E14.5 (RPKM 330.1), liver E14 (RPKM 286.1) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Rps10 in Genome Data Viewer
    Location:
    17; 17 A3.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (27849389..27854218, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (27630415..27635244, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 29 Neighboring gene nudix (nucleotide diphosphate linked moiety X)-type motif 3 Neighboring gene predicted gene 15420 Neighboring gene protein kinase C and casein kinase substrate in neurons 1 Neighboring gene SAM pointed domain containing ets transcription factor

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Clone Names

    • MGC107635

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    enables tRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IC
    Inferred by Curator
    more info
    PubMed 
    involved_in translation at postsynapse NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in translation at presynapse NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IC
    Inferred by Curator
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    located_in cytosolic ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of cytosolic small ribosomal subunit IC
    Inferred by Curator
    more info
    PubMed 
    part_of cytosolic small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in postsynapse NAS
    Non-traceable Author Statement
    more info
    PubMed 
    is_active_in presynapse NAS
    Non-traceable Author Statement
    more info
    PubMed 
    is_active_in ribosome NAS
    Non-traceable Author Statement
    more info
    PubMed 
    is_active_in synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    is_active_in synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in synapse NAS
    Non-traceable Author Statement
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001364934.1NP_001351863.1  40S ribosomal protein S10 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC131800, AK136533, CJ042533
      Consensus CDS
      CCDS89035.1
      UniProtKB/TrEMBL
      A0A8C6MRP8, Q3UW83
      Related
      ENSMUSP00000025052.7, ENSMUST00000025052.14
      Conserved Domains (1) summary
      pfam03501
      Location:397
      S10_plectin; Plectin/S10 domain
    2. NM_025963.4NP_080239.1  40S ribosomal protein S10 isoform 1

      See identical proteins and their annotated locations for NP_080239.1

      Status: VALIDATED

      Source sequence(s)
      AC131800
      Consensus CDS
      CCDS37522.1
      UniProtKB/Swiss-Prot
      P63325, Q9DCR5
      UniProtKB/TrEMBL
      A0A6P5RGE9, A0A8C6GJ13, Q5M9K7
      Related
      ENSMUSP00000110532.2, ENSMUST00000114882.9
      Conserved Domains (1) summary
      pfam03501
      Location:397
      S10_plectin; Plectin/S10 domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      27849389..27854218 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)