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    Riox2 ribosomal oxygenase 2 [ Mus musculus (house mouse) ]

    Gene ID: 67014, updated on 19-Mar-2019

    Summary

    Official Symbol
    Riox2provided by MGI
    Official Full Name
    ribosomal oxygenase 2provided by MGI
    Primary source
    MGI:MGI:1914264
    See related
    Ensembl:ENSMUSG00000022724
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mina; AI449204; 1810047J07Rik; 2410057H13Rik; 3830408E23Rik
    Expression
    Ubiquitous expression in bladder adult (RPKM 5.3), placenta adult (RPKM 4.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Riox2 in Genome Data Viewer
    Location:
    16; 16 C1.3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 16 NC_000082.6 (59471770..59492525)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (59471601..59492287)

    Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700022E09 gene Neighboring gene gamma-aminobutyric acid (GABA) receptor, rho 3 Neighboring gene ORAI calcium release-activated calcium modulator 2, pseudogene Neighboring gene beta-gamma crystallin domain containing 3 Neighboring gene RIKEN cDNA 4930547E14 gene Neighboring gene ADP-ribosylation factor-like 6 Neighboring gene Eph receptor A6 Neighboring gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
     
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transcription corepressor activity IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    oxidation-reduction process IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of cell proliferation ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    transcription factor complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 

    General protein information

    Preferred Names
    ribosomal oxygenase 2; bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA
    Names
    MYC-induced nuclear antigen
    histone lysine demethylase MINA
    myc induced nuclear antigen

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025910.3NP_080186.3  ribosomal oxygenase 2

      See identical proteins and their annotated locations for NP_080186.3

      Status: VALIDATED

      Source sequence(s)
      AC154854, AK007810, BY345199
      Consensus CDS
      CCDS28257.1
      UniProtKB/Swiss-Prot
      Q8CD15
      Related
      ENSMUSP00000023407.5, ENSMUST00000023407.11
      Conserved Domains (1) summary
      pfam08007
      Location:51363
      Cupin_4; Cupin superfamily protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000082.6 Reference GRCm38.p4 C57BL/6J

      Range
      59471770..59492525
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006522480.3XP_006522543.1  bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA isoform X2

      Related
      ENSMUSP00000112899.1, ENSMUST00000120674.7
      Conserved Domains (1) summary
      pfam08007
      Location:51351
      Cupin_4; Cupin superfamily protein
    2. XM_006522479.3XP_006522542.1  bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA isoform X1

      See identical proteins and their annotated locations for XP_006522542.1

      UniProtKB/Swiss-Prot
      Q8CD15
      Related
      ENSMUSP00000125297.1, ENSMUST00000160571.1
      Conserved Domains (1) summary
      pfam08007
      Location:51363
      Cupin_4; Cupin superfamily protein

    RNA

    1. XR_384594.3 RNA Sequence

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