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    Kctd20 potassium channel tetramerisation domain containing 20 [ Mus musculus (house mouse) ]

    Gene ID: 66989, updated on 31-Jan-2019

    Summary

    Official Symbol
    Kctd20provided by MGI
    Official Full Name
    potassium channel tetramerisation domain containing 20provided by MGI
    Primary source
    MGI:MGI:1914239
    See related
    Ensembl:ENSMUSG00000005936
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI451943; AW541186; D17Ertd562e; 2410004N11Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 19.4), CNS E14 (RPKM 19.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See Kctd20 in Genome Data Viewer
    Location:
    17 A3.3; 17 15.03 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (28952448..28969549)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (29090161..29104882)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930539E08 gene Neighboring gene RIKEN cDNA 1700030A11 gene Neighboring gene predicted gene 16191 Neighboring gene peroxisomal, testis specific 1 Neighboring gene serine/threonine kinase 38 Neighboring gene predicted gene 16196

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    positive regulation of phosphorylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    BTB/POZ domain-containing protein KCTD20
    Names
    potassium channel tetramerization domain containing 20

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356298.1NP_001343227.1  BTB/POZ domain-containing protein KCTD20 isoform 2

      Status: VALIDATED

      Source sequence(s)
      BC052712, CT025867
    2. NM_001356299.1NP_001343228.1  BTB/POZ domain-containing protein KCTD20 isoform 3

      Status: VALIDATED

      Source sequence(s)
      BC052712, BY142726
      Conserved Domains (2) summary
      pfam16017
      Location:47152
      BTB_3; BTB/POZ domain
      cl17171
      Location:209248
      PH-like; Pleckstrin homology-like domain
    3. NM_001356300.1NP_001343229.1  BTB/POZ domain-containing protein KCTD20 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK168440, BC052712, BY142726
      Conserved Domains (2) summary
      pfam16017
      Location:118223
      BTB_3; BTB/POZ domain
      cl17171
      Location:280319
      PH-like; Pleckstrin homology-like domain
    4. NM_025888.6NP_080164.2  BTB/POZ domain-containing protein KCTD20 isoform 1

      See identical proteins and their annotated locations for NP_080164.2

      Status: VALIDATED

      Source sequence(s)
      AK030202, BC052712
      Consensus CDS
      CCDS28588.1
      UniProtKB/Swiss-Prot
      Q8CDD8
      Related
      ENSMUSP00000131435.1, ENSMUST00000168507.1
      Conserved Domains (2) summary
      pfam16017
      Location:118223
      BTB_3; BTB/POZ domain
      cl17171
      Location:280319
      PH-like; Pleckstrin homology-like domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

      Range
      28952448..28969549
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006524810.1XP_006524873.1  BTB/POZ domain-containing protein KCTD20 isoform X1

      UniProtKB/Swiss-Prot
      Q8CDD8
      Related
      ENSMUSP00000156936.1, ENSMUST00000233197.1
      Conserved Domains (2) summary
      pfam16017
      Location:118223
      BTB_3; BTB/POZ domain
      cl17171
      Location:280319
      PH-like; Pleckstrin homology-like domain
    2. XM_006524811.1XP_006524874.1  BTB/POZ domain-containing protein KCTD20 isoform X1

      See identical proteins and their annotated locations for XP_006524874.1

      UniProtKB/Swiss-Prot
      Q8CDD8
      Conserved Domains (2) summary
      pfam16017
      Location:118223
      BTB_3; BTB/POZ domain
      cl17171
      Location:280319
      PH-like; Pleckstrin homology-like domain
    3. XM_006524812.2XP_006524875.1  BTB/POZ domain-containing protein KCTD20 isoform X2

      Related
      ENSMUSP00000113740.1, ENSMUST00000117672.8
      Conserved Domains (2) summary
      smart00225
      Location:110198
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam16017
      Location:142371
      BTB_3; BTB/POZ domain

    Reference GRCm38.p4 NOD/ShiLtJ

    Genomic

    1. NT_187005.1 Reference GRCm38.p4 NOD/ShiLtJ

      Range
      1653287..1668007
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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