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    Cdk5rap1 CDK5 regulatory subunit associated protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 66971, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cdk5rap1provided by MGI
    Official Full Name
    CDK5 regulatory subunit associated protein 1provided by MGI
    Primary source
    MGI:MGI:1914221
    See related
    Ensembl:ENSMUSG00000027487
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2310066P17Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 4.2), bladder adult (RPKM 3.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See Cdk5rap1 in Genome Data Viewer
    Location:
    2; 2 H1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (154222011..154372852, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (154161122..154198455, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene BPI fold containing family A, member 5 Neighboring gene BPI fold containing family B, member 1 Neighboring gene BPI fold containing family B, member 5 Neighboring gene BPI fold containing family B, member 9A Neighboring gene BPI fold containing family B, member 9B Neighboring gene syntrophin, acidic 1 Neighboring gene predicted gene, 39962

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
     
    N6-isopentenyladenosine methylthiotransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    iron-sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein-containing complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mitochondrion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mitochondrion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 

    General protein information

    Preferred Names
    CDK5 regulatory subunit-associated protein 1
    Names
    CDK5 activator-binding protein C42

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025876.2NP_080152.1  CDK5 regulatory subunit-associated protein 1

      See identical proteins and their annotated locations for NP_080152.1

      Status: PROVISIONAL

      Source sequence(s)
      AL732601, AL928894
      Consensus CDS
      CCDS16931.1
      UniProtKB/Swiss-Prot
      Q8BTW8
      Related
      ENSMUSP00000028990.3, ENSMUST00000028990.9
      Conserved Domains (3) summary
      PRK14329
      Location:87573
      PRK14329; (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
      pfam00919
      Location:100203
      UPF0004; Uncharacterized protein family UPF0004
      cl01282
      Location:500574
      TRAM; TRAM domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      154222011..154372852 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001783167.1 RNA Sequence

    2. XR_001783168.1 RNA Sequence

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