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    Golt1b golgi transport 1B [ Mus musculus (house mouse) ]

    Gene ID: 66964, updated on 31-Jan-2019

    Summary

    Official Symbol
    Golt1bprovided by MGI
    Official Full Name
    golgi transport 1Bprovided by MGI
    Primary source
    MGI:MGI:1914214
    See related
    Ensembl:ENSMUSG00000030245
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CGI-141; AA407874; AU024291; 2310061A22Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 11.2), limb E14.5 (RPKM 10.4) and 25 other tissues See more
    Orthologs

    Genomic context

    See Golt1b in Genome Data Viewer
    Location:
    6; 6 G2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (142387210..142410084)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (142335763..142352378)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene solute carrier organic anion transporter family, member 1a5 Neighboring gene islet amyloid polypeptide Neighboring gene pyridine nucleotide-disulphide oxidoreductase domain 1 Neighboring gene RecQ protein-like Neighboring gene spexin hormone Neighboring gene glycogen synthase 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (3) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    protein-containing complex ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    vesicle transport protein GOT1B

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025872.4NP_080148.1  vesicle transport protein GOT1B

      See identical proteins and their annotated locations for NP_080148.1

      Status: PROVISIONAL

      Source sequence(s)
      AC142413
      Consensus CDS
      CCDS20682.1
      UniProtKB/Swiss-Prot
      Q9CR60
      Related
      ENSMUSP00000032372.6, ENSMUST00000032372.6
      Conserved Domains (1) summary
      cl02130
      Location:4120
      Got1; Got1/Sft2-like family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      142387210..142410084
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011241596.2XP_011239898.1  vesicle transport protein GOT1B isoform X1

      See identical proteins and their annotated locations for XP_011239898.1

      Conserved Domains (1) summary
      cl02130
      Location:4129
      Got1; Got1/Sft2-like family
    2. XM_011241597.2XP_011239899.1  vesicle transport protein GOT1B isoform X1

      See identical proteins and their annotated locations for XP_011239899.1

      Conserved Domains (1) summary
      cl02130
      Location:4129
      Got1; Got1/Sft2-like family
    3. XM_006506981.3XP_006507044.1  vesicle transport protein GOT1B isoform X2

      Conserved Domains (1) summary
      cl02130
      Location:4120
      Got1; Got1/Sft2-like family

    RNA

    1. XR_869553.1 RNA Sequence

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