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    Aagab alpha- and gamma-adaptin binding protein [ Mus musculus (house mouse) ]

    Gene ID: 66939, updated on 31-Jan-2019

    Summary

    Official Symbol
    Aagabprovided by MGI
    Official Full Name
    alpha- and gamma-adaptin binding proteinprovided by MGI
    Primary source
    MGI:MGI:1914189
    See related
    Ensembl:ENSMUSG00000037257
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    p34; 2310007F21Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 19.2), ovary adult (RPKM 16.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Aagab in Genome Data Viewer
    Location:
    9; 9 C
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (63602628..63641897)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (63450462..63489696)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene IQ motif containing H Neighboring gene predicted gene, 35809 Neighboring gene predicted gene, 39358 Neighboring gene SMAD family member 3 Neighboring gene predicted gene, 35941

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nuclear speck ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    alpha- and gamma-adaptin-binding protein p34

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357323.1NP_001344252.1  alpha- and gamma-adaptin-binding protein p34 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is 1 aa shorter compared to isoform 1.
      Source sequence(s)
      CT010509
      Conserved Domains (1) summary
      pfam10199
      Location:155294
      Adaptin_binding; Alpha and gamma adaptin binding protein p34
    2. NM_025857.3NP_080133.1  alpha- and gamma-adaptin-binding protein p34 isoform 1

      See identical proteins and their annotated locations for NP_080133.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
      Source sequence(s)
      CT010509
      Consensus CDS
      CCDS23271.1
      UniProtKB/Swiss-Prot
      Q8R2R3
      Related
      ENSMUSP00000048595.7, ENSMUST00000041551.8
      Conserved Domains (1) summary
      pfam10199
      Location:155295
      Adaptin_binding; Alpha and gamma adaptin binding protein p34

    RNA

    1. NR_151671.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate splice junction compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      CT010509

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      63602628..63641897
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006511371.2XP_006511434.1  alpha- and gamma-adaptin-binding protein p34 isoform X1

      Conserved Domains (1) summary
      pfam10199
      Location:155294
      Adaptin_binding; Alpha and gamma adaptin binding protein p34

    RNA

    1. XR_379442.2 RNA Sequence

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