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    Aagab alpha- and gamma-adaptin binding protein [ Mus musculus (house mouse) ]

    Gene ID: 66939, updated on 26-Sep-2022

    Summary

    Official Symbol
    Aagabprovided by MGI
    Official Full Name
    alpha- and gamma-adaptin binding proteinprovided by MGI
    Primary source
    MGI:MGI:1914189
    See related
    Ensembl:ENSMUSG00000037257 AllianceGenome:MGI:1914189
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    p34; 2310007F21Rik
    Summary
    Predicted to act upstream of or within protein transport. Predicted to be located in cytosol and nuclear speck. Is expressed in dorsal root ganglion; midbrain ventricular layer; and telencephalon ventricular layer. Human ortholog(s) of this gene implicated in punctate palmoplantar keratoderma type I. Orthologous to human AAGAB (alpha and gamma adaptin binding protein). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in thymus adult (RPKM 19.2), ovary adult (RPKM 16.9) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Aagab in Genome Data Viewer
    Location:
    9; 9 C
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (63509897..63551872)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (63602630..63644590)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 16759 Neighboring gene IQ motif containing H Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 17 pseudogene Neighboring gene predicted gene, 39358 Neighboring gene SMAD family member 3 Neighboring gene predicted gene, 51710 Neighboring gene predicted gene, 35941

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear speck ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    alpha- and gamma-adaptin-binding protein p34

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357323.1NP_001344252.1  alpha- and gamma-adaptin-binding protein p34 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is 1 aa shorter compared to isoform 1.
      Source sequence(s)
      CT010509
      Conserved Domains (1) summary
      pfam10199
      Location:155294
      Adaptin_binding; Alpha and gamma adaptin binding protein p34
    2. NM_025857.3NP_080133.1  alpha- and gamma-adaptin-binding protein p34 isoform 1

      See identical proteins and their annotated locations for NP_080133.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
      Source sequence(s)
      CT010509
      Consensus CDS
      CCDS23271.1
      UniProtKB/Swiss-Prot
      Q8R2R3, Q9CV78
      Related
      ENSMUSP00000048595.8, ENSMUST00000041551.9
      Conserved Domains (1) summary
      pfam10199
      Location:155295
      Adaptin_binding; Alpha and gamma adaptin binding protein p34

    RNA

    1. NR_151671.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate splice junction compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      CT010509

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      63509897..63551872
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_379442.4 RNA Sequence