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    Prpf38b PRP38 pre-mRNA processing factor 38 (yeast) domain containing B [ Mus musculus (house mouse) ]

    Gene ID: 66921, updated on 23-Jun-2021

    Summary

    Official Symbol
    Prpf38bprovided by MGI
    Official Full Name
    PRP38 pre-mRNA processing factor 38 (yeast) domain containing Bprovided by MGI
    Primary source
    MGI:MGI:1914171
    See related
    Ensembl:ENSMUSG00000027881
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AU018955; 1110021E09Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 27.0), thymus adult (RPKM 25.1) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Prpf38b in Genome Data Viewer
    Location:
    3; 3 F3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (108810121..108819055, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (108902805..108911729, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (108705725..108714622, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene syntaxin binding protein 3 Neighboring gene fibronectin type III domain containing 7 Neighboring gene HEN1 methyltransferase homolog 1 (Arabidopsis) Neighboring gene family with sequence similarity 102, member B Neighboring gene predicted gene 43221

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in biological_process ND
    No biological Data available
    more info
     
    acts_upstream_of_or_within mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    part_of precatalytic spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    pre-mRNA-splicing factor 38B

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356292.1NP_001343221.1  pre-mRNA-splicing factor 38B isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL671894
      Conserved Domains (1) summary
      TIGR01642
      Location:213321
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    2. NM_025845.3NP_080121.1  pre-mRNA-splicing factor 38B isoform 1

      See identical proteins and their annotated locations for NP_080121.1

      Status: VALIDATED

      Source sequence(s)
      AL671894
      Consensus CDS
      CCDS17770.1
      UniProtKB/Swiss-Prot
      Q80SY5
      Related
      ENSMUSP00000029480.9, ENSMUST00000029480.9
      Conserved Domains (1) summary
      pfam03371
      Location:48228
      PRP38; PRP38 family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      108810121..108819055 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036163233.1XP_036019126.1  pre-mRNA-splicing factor 38B isoform X3

      Conserved Domains (1) summary
      TIGR01642
      Location:226334
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    2. XM_036163234.1XP_036019127.1  pre-mRNA-splicing factor 38B isoform X4

      Conserved Domains (1) summary
      TIGR01642
      Location:213321
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    3. XM_030252761.1XP_030108621.1  pre-mRNA-splicing factor 38B isoform X4

      Conserved Domains (1) summary
      TIGR01642
      Location:213321
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    4. XM_006501914.3XP_006501977.1  pre-mRNA-splicing factor 38B isoform X1

      Conserved Domains (2) summary
      TIGR01642
      Location:299407
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam03371
      Location:15116
      PRP38; PRP38 family
    5. XM_006501915.3XP_006501978.1  pre-mRNA-splicing factor 38B isoform X2

      Conserved Domains (2) summary
      TIGR01642
      Location:265373
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam03371
      Location:182
      PRP38; PRP38 family
    6. XM_036163235.1XP_036019128.1  pre-mRNA-splicing factor 38B isoform X4

      Conserved Domains (1) summary
      TIGR01642
      Location:213321
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
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