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    Nudt16l1 nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 66911, updated on 23-Jun-2021

    Summary

    Official Symbol
    Nudt16l1provided by MGI
    Official Full Name
    nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1provided by MGI
    Primary source
    MGI:MGI:1914161
    See related
    Ensembl:ENSMUSG00000022516
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Sdos; 1110001K21Rik; 5330437I08Rik
    Expression
    Ubiquitous expression in kidney adult (RPKM 49.1), adrenal adult (RPKM 46.5) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Nudt16l1 in Genome Data Viewer
    Location:
    16 A1; 16 2.48 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (4756975..4758892)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (4939111..4941028)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (4939111..4941025)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene UBA-like domain containing 1 Neighboring gene mahogunin, ring finger 1 Neighboring gene predicted gene, 16861 Neighboring gene ankyrin repeat and sterile alpha motif domain containing 3 Neighboring gene predicted gene, 36681 Neighboring gene dynein axonemal assembly factor 8

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    NOT enables m7G(5')pppN diphosphatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    NOT enables m7G(5')pppN diphosphatase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    NOT enables nucleotide phosphatase activity, acting on free nucleotides IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    NOT enables phosphodiesterase decapping endonuclease activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables snoRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables snoRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    NOT involved_in mRNA catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in negative regulation of double-strand break repair via nonhomologous end joining ISO
    Inferred from Sequence Orthology
    more info
     
    NOT involved_in sno(s)RNA catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    tudor-interacting repair regulator protein
    Names
    NUDT16-like protein 1
    protein syndesmos

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001316715.1NP_001303644.1  tudor-interacting repair regulator protein isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region, which results in a frameshift, compared to variant 1. The encoded isoform (2) has a shorter and distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AK003241, BQ030979, CF160100
      Consensus CDS
      CCDS88870.1
      UniProtKB/Swiss-Prot
      Q8VHN8
      Related
      ENSMUSP00000054201.10, ENSMUST00000050881.10
    2. NM_025839.4NP_080115.1  tudor-interacting repair regulator protein isoform 1

      See identical proteins and their annotated locations for NP_080115.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AK003241, BQ030979
      Consensus CDS
      CCDS27927.1
      UniProtKB/Swiss-Prot
      Q8VHN8
      Related
      ENSMUSP00000155142.2, ENSMUST00000230931.2

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      4756975..4758892
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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