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    Hmg20a high mobility group 20A [ Mus musculus (house mouse) ]

    Gene ID: 66867, updated on 9-Aug-2021

    Summary

    Official Symbol
    Hmg20aprovided by MGI
    Official Full Name
    high mobility group 20Aprovided by MGI
    Primary source
    MGI:MGI:1914117
    See related
    Ensembl:ENSMUSG00000032329
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ibraf; Hmgxb1; 1200004E06Rik; 5730490E10Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 21.5), whole brain E14.5 (RPKM 21.1) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Hmg20a in Genome Data Viewer
    Location:
    9; 9 B
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (56325891..56404220)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (56418619..56496936)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (56266653..56344743)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene tetraspanin 3 Neighboring gene pseudopodium-enriched atypical kinase 1 Neighboring gene pseudopodium-enriched atypical kinase 1, opposite strand Neighboring gene ubiquitin-conjugating enzyme E2S pseudogene Neighboring gene predicted gene, 53524 Neighboring gene predicted gene, 31529

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    high mobility group protein 20A
    Names
    HMG box-containing protein 20A
    HMG domain-containing protein HMGX1
    inhibitor of BRAF35

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025812.3NP_080088.1  high mobility group protein 20A

      See identical proteins and their annotated locations for NP_080088.1

      Status: VALIDATED

      Source sequence(s)
      AC159819
      Consensus CDS
      CCDS23208.1
      UniProtKB/Swiss-Prot
      Q9DC33
      Related
      ENSMUSP00000034879.4, ENSMUST00000034879.5
      Conserved Domains (2) summary
      cd01390
      Location:102167
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam17380
      Location:76312
      DUF5401; Family of unknown function (DUF5401)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      56325891..56404220
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036155195.1XP_036011088.1  high mobility group protein 20A isoform X1

      Conserved Domains (2) summary
      cd01390
      Location:102167
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam17380
      Location:76312
      DUF5401; Family of unknown function (DUF5401)
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