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    Nhlrc2 NHL repeat containing 2 [ Mus musculus (house mouse) ]

    Gene ID: 66866, updated on 14-Aug-2021

    Summary

    Official Symbol
    Nhlrc2provided by MGI
    Official Full Name
    NHL repeat containing 2provided by MGI
    Primary source
    MGI:MGI:1914116
    See related
    Ensembl:ENSMUSG00000025078
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI835049; AV002846; AW496455; 1200003G01Rik
    Expression
    Ubiquitous expression in lung adult (RPKM 10.3), colon adult (RPKM 4.7) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Nhlrc2 in Genome Data Viewer
    Location:
    19; 19 D2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (56536682..56591935)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (56548250..56603503)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (56622751..56673336)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene pleckstrin homology domain containing, family S member 1 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene DNA cross-link repair 1A Neighboring gene predicted gene, 32441 Neighboring gene predicted gene, 52389

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (1) 
    • Endonuclease-mediated (1)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    NHL repeat-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025811.3NP_080087.1  NHL repeat-containing protein 2

      See identical proteins and their annotated locations for NP_080087.1

      Status: PROVISIONAL

      Source sequence(s)
      AC116849, AC166746
      Consensus CDS
      CCDS29918.1
      UniProtKB/Swiss-Prot
      Q8BZW8
      UniProtKB/TrEMBL
      B2RR26
      Related
      ENSMUSP00000071370.6, ENSMUST00000071423.7
      Conserved Domains (4) summary
      cd03012
      Location:55182
      TlpA_like_DipZ_like; TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA ...
      cd05819
      Location:163208
      NHL; NHL repeat [structural motif]
      cd14951
      Location:261623
      NHL-2_like; NHL repeat domain of NHL repeat-containing protein 2 and similar proteins
      cl18310
      Location:163296
      NHL; NHL repeat unit of beta-propeller proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      56536682..56591935
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006527267.5XP_006527330.1  NHL repeat-containing protein 2 isoform X1

      Conserved Domains (1) summary
      cd14951
      Location:14371
      NHL-2_like; NHL repeat domain of NHL repeat-containing protein 2 and similar proteins

    RNA

    1. XR_004940167.1 RNA Sequence

    2. XR_001782612.2 RNA Sequence

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