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    Acot13 acyl-CoA thioesterase 13 [ Mus musculus (house mouse) ]

    Gene ID: 66834, updated on 31-Jan-2019

    Summary

    Official Symbol
    Acot13provided by MGI
    Official Full Name
    acyl-CoA thioesterase 13provided by MGI
    Primary source
    MGI:MGI:1914084
    See related
    Ensembl:ENSMUSG00000006717
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Them2; 0610006O17Rik
    Expression
    Ubiquitous expression in heart adult (RPKM 114.5), kidney adult (RPKM 88.5) and 27 other tissues See more
    Orthologs

    Genomic context

    See Acot13 in Genome Data Viewer
    Location:
    13; 13 A3.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (24817955..24831489, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (24909824..24923358, complement)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene geminin Neighboring gene cDNA sequence BC005537 Neighboring gene RIKEN cDNA D130043K22 gene Neighboring gene tyrosyl-DNA phosphodiesterase 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    acyl-CoA hydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acyl-CoA hydrolase activity ISO
    Inferred from Sequence Orthology
    more info
     
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    negative regulation of cold-induced thermogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein homotetramerization ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrion HDA PubMed 
    mitochondrion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    acyl-coenzyme A thioesterase 13
    Names
    thioesterase superfamily member 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025790.2NP_080066.1  acyl-coenzyme A thioesterase 13

      See identical proteins and their annotated locations for NP_080066.1

      Status: PROVISIONAL

      Source sequence(s)
      AK002261
      Consensus CDS
      CCDS26380.1
      UniProtKB/Swiss-Prot
      Q9CQR4
      UniProtKB/TrEMBL
      Q4VA32
      Related
      ENSMUSP00000006900.6, ENSMUST00000006900.6
      Conserved Domains (1) summary
      cd03443
      Location:28138
      PaaI_thioesterase; PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      24817955..24831489 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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