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    Ccdc85c coiled-coil domain containing 85C [ Mus musculus (house mouse) ]

    Gene ID: 668158, updated on 16-Feb-2019

    Summary

    Official Symbol
    Ccdc85cprovided by MGI
    Official Full Name
    coiled-coil domain containing 85Cprovided by MGI
    Primary source
    MGI:MGI:3644008
    See related
    Ensembl:ENSMUSG00000084883
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    hhy; Gm265; Gm9010; EG668158
    Expression
    Ubiquitous expression in colon adult (RPKM 33.4), duodenum adult (RPKM 30.2) and 24 other tissues See more
    Orthologs

    Genomic context

    See Ccdc85c in Genome Data Viewer
    Location:
    12; 12 F1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (108203599..108275927, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (109444555..109513627, complement)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene SET domain containing 3 Neighboring gene cyclin K Neighboring gene hedgehog interacting protein-like 1 Neighboring gene cytochrome P450, family 46, subfamily a, polypeptide 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Spontaneous (1)  1 citation
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    cerebral cortex development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    apical junction complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    bicellular tight junction IEA
    Inferred from Electronic Annotation
    more info
     
    cell junction IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 85C

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001159910.2NP_001153382.1  coiled-coil domain-containing protein 85C

      See identical proteins and their annotated locations for NP_001153382.1

      Status: VALIDATED

      Source sequence(s)
      AC122407, AC152059
      Consensus CDS
      CCDS49166.1
      UniProtKB/Swiss-Prot
      E9Q6B2
      Related
      ENSMUSP00000152421.1, ENSMUST00000222310.1
      Conserved Domains (1) summary
      pfam10226
      Location:16203
      DUF2216; Uncharacterized conserved proteins (DUF2216)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      108203599..108275927 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006516161.3XP_006516224.1  coiled-coil domain-containing protein 85C isoform X4

      Conserved Domains (1) summary
      pfam10226
      Location:16203
      DUF2216; Uncharacterized conserved proteins (DUF2216)
    2. XM_006516160.3XP_006516223.1  coiled-coil domain-containing protein 85C isoform X3

      Conserved Domains (1) summary
      pfam10226
      Location:16203
      DUF2216; Uncharacterized conserved proteins (DUF2216)
    3. XM_006516159.3XP_006516222.1  coiled-coil domain-containing protein 85C isoform X2

      Conserved Domains (1) summary
      pfam10226
      Location:16203
      DUF2216; Uncharacterized conserved proteins (DUF2216)
    4. XM_006516158.3XP_006516221.1  coiled-coil domain-containing protein 85C isoform X1

      UniProtKB/TrEMBL
      A0A217FL83
      Related
      ENSMUSP00000125757.2, ENSMUST00000136175.2
      Conserved Domains (1) summary
      pfam10226
      Location:16203
      DUF2216; Uncharacterized conserved proteins (DUF2216)
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