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    Ccdc85c coiled-coil domain containing 85C [ Mus musculus (house mouse) ]

    Gene ID: 668158, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ccdc85cprovided by MGI
    Official Full Name
    coiled-coil domain containing 85Cprovided by MGI
    Primary source
    MGI:MGI:3644008
    See related
    Ensembl:ENSMUSG00000084883
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    hhy; Gm265; Gm9010; EG668158
    Expression
    Ubiquitous expression in colon adult (RPKM 33.4), duodenum adult (RPKM 30.2) and 24 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ccdc85c in Genome Data Viewer
    Location:
    12; 12 F1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (108169858..108244111, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (108203599..108277852, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (109444555..109513627, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene B cell leukemia/lymphoma 11B Neighboring gene SET domain containing 3 Neighboring gene cyclin K Neighboring gene hedgehog interacting protein-like 1 Neighboring gene cytochrome P450, family 46, subfamily a, polypeptide 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Spontaneous (1)  1 citation
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in cerebral cortex development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in adherens junction ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in apical junction complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in apical junction complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in bicellular tight junction IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cell junction IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 85C

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001159910.2NP_001153382.1  coiled-coil domain-containing protein 85C

      See identical proteins and their annotated locations for NP_001153382.1

      Status: VALIDATED

      Source sequence(s)
      AC122407, AC152059
      Consensus CDS
      CCDS49166.1
      UniProtKB/Swiss-Prot
      E9Q6B2
      Related
      ENSMUSP00000152421.2, ENSMUST00000222310.2
      Conserved Domains (1) summary
      pfam10226
      Location:16203
      DUF2216; Uncharacterized conserved proteins (DUF2216)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      108169858..108244111 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006516161.4XP_006516224.1  coiled-coil domain-containing protein 85C isoform X4

      Conserved Domains (1) summary
      pfam10226
      Location:16203
      CCDC85; CCDC85 family
    2. XM_006516160.4XP_006516223.1  coiled-coil domain-containing protein 85C isoform X3

      Conserved Domains (1) summary
      pfam10226
      Location:16203
      CCDC85; CCDC85 family
    3. XM_006516159.4XP_006516222.1  coiled-coil domain-containing protein 85C isoform X2

      Conserved Domains (1) summary
      pfam10226
      Location:16203
      CCDC85; CCDC85 family
    4. XM_006516158.4XP_006516221.1  coiled-coil domain-containing protein 85C isoform X1

      UniProtKB/TrEMBL
      A0A217FL83
      Related
      ENSMUSP00000125757.3, ENSMUST00000136175.3
      Conserved Domains (1) summary
      pfam10226
      Location:16203
      CCDC85; CCDC85 family
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