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    4921524J17Rik RIKEN cDNA 4921524J17 gene [ Mus musculus (house mouse) ]

    Gene ID: 66714, updated on 31-Jan-2019

    Summary

    Official Symbol
    4921524J17Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4921524J17 geneprovided by MGI
    Primary source
    MGI:MGI:1913964
    See related
    Ensembl:ENSMUSG00000036934
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in placenta adult (RPKM 10.7), CNS E18 (RPKM 7.1) and 26 other tissues See more
    Orthologs

    Genomic context

    See 4921524J17Rik in Genome Data Viewer
    Location:
    8; 8 C3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (85408759..85432841, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (87932658..87956740, complement)

    Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene origin recognition complex, subunit 6 Neighboring gene myosin light chain kinase 3 Neighboring gene glutamic pyruvate transaminase (alanine aminotransferase) 2 Neighboring gene DnaJ heat shock protein family (Hsp40) member A2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    UPF0547 protein C16orf87 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025722.3NP_079998.1  UPF0547 protein C16orf87 homolog

      See identical proteins and their annotated locations for NP_079998.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer, protein-coding transcript.
      Source sequence(s)
      AK014959, CK333687
      Consensus CDS
      CCDS22498.1
      UniProtKB/Swiss-Prot
      Q9CR55
      Related
      ENSMUSP00000040975.5, ENSMUST00000047749.6
      Conserved Domains (1) summary
      pfam10571
      Location:1438
      UPF0547; Uncharacterized protein family UPF0547

    RNA

    1. NR_033144.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon compared to variant 1, that causes a frameshift. The resulting transcript is a candidate for nonsense-mediated mRNA decay (NMD) and is therefore not thought to be protein-coding.
      Source sequence(s)
      AA030168, AK014959, CK333687

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

      Range
      85408759..85432841 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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