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    Rae1 ribonucleic acid export 1 [ Mus musculus (house mouse) ]

    Gene ID: 66679, updated on 23-Jun-2021

    Summary

    Official Symbol
    Rae1provided by MGI
    Official Full Name
    ribonucleic acid export 1provided by MGI
    Primary source
    MGI:MGI:1913929
    See related
    Ensembl:ENSMUSG00000027509
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    M; MNR; MNRP; MNRP41; D2Ertd342; D2Ertd342e; 3230401I12Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 61.6), ovary adult (RPKM 34.8) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Rae1 in Genome Data Viewer
    Location:
    2 H3; 2 95.66 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (172841909..172857532)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (173000116..173015739)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (172825638..172841233)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein 7 Neighboring gene enhancer in intron 1 of Bmp7 Neighboring gene predicted gene, 40010 Neighboring gene predicted gene, 52538 Neighboring gene SPO11 initiator of meiotic double stranded breaks Neighboring gene VISTA enhancer mm92 Neighboring gene RNA binding motif protein 38

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables ubiquitin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in fibrillar center ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitotic spindle pole ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear envelope ISO
    Inferred from Sequence Orthology
    more info
     
    part_of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of nuclear pore ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    mRNA export factor
    Names
    RAE1 RNA export 1 homolog
    mRNA-associated protein mrnp 41
    rae1 protein homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175112.5NP_780321.1  mRNA export factor

      See identical proteins and their annotated locations for NP_780321.1

      Status: VALIDATED

      Source sequence(s)
      AL928599, BC059051, CO041965
      Consensus CDS
      CCDS17138.1
      UniProtKB/Swiss-Prot
      Q8C570
      Related
      ENSMUSP00000029013.4, ENSMUST00000029013.10
      Conserved Domains (2) summary
      sd00039
      Location:4284
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:40335
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      172841909..172857532
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006500024.5XP_006500087.1  mRNA export factor isoform X1

      See identical proteins and their annotated locations for XP_006500087.1

      UniProtKB/Swiss-Prot
      Q8C570
      Conserved Domains (2) summary
      sd00039
      Location:4284
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:40335
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    2. XM_006500023.2XP_006500086.1  mRNA export factor isoform X1

      See identical proteins and their annotated locations for XP_006500086.1

      UniProtKB/Swiss-Prot
      Q8C570
      Conserved Domains (2) summary
      sd00039
      Location:4284
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:40335
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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