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    Ubr7 ubiquitin protein ligase E3 component n-recognin 7 (putative) [ Mus musculus (house mouse) ]

    Gene ID: 66622, updated on 18-Nov-2018

    Summary

    Official Symbol
    Ubr7provided by MGI
    Official Full Name
    ubiquitin protein ligase E3 component n-recognin 7 (putative)provided by MGI
    Primary source
    MGI:MGI:1913872
    See related
    Ensembl:ENSMUSG00000041712
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA589405; AW557761; 5730410I19Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 21.0), CNS E11.5 (RPKM 20.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ubr7 in Genome Data Viewer
    Location:
    12; 12 E
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (102757975..102777701)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (103996185..104015911)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene predicted gene 20604 Neighboring gene transmembrane protein 251 Neighboring gene GON7, KEOPS complex subunit homolog Neighboring gene BTB (POZ) domain containing 7 Neighboring gene cytochrome c oxidase subunit 7C, mitochondrial pseudogene Neighboring gene ribosomal protein S2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    putative E3 ubiquitin-protein ligase UBR7
    Names
    N-recognin-7
    RING-type E3 ubiquitin transferase UBR7
    NP_079942.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025666.2NP_079942.1  putative E3 ubiquitin-protein ligase UBR7

      Status: PROVISIONAL

      Source sequence(s)
      AK088208
      Consensus CDS
      CCDS26124.1
      UniProtKB/Swiss-Prot
      Q8BU04
      UniProtKB/TrEMBL
      Q52KC0
      Related
      ENSMUSP00000041247.6, ENSMUST00000046404.7
      Conserved Domains (2) summary
      cd15542
      Location:134185
      PHD_UBR7; PHD finger found in putative E3 ubiquitin-protein ligase UBR7
      pfam02207
      Location:56113
      zf-UBR; Putative zinc finger in N-recognin (UBR box)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      102757975..102777701
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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