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    Bod1l biorientation of chromosomes in cell division 1-like [ Mus musculus (house mouse) ]

    Gene ID: 665775, updated on 31-Jan-2019

    Summary

    Official Symbol
    Bod1lprovided by MGI
    Official Full Name
    biorientation of chromosomes in cell division 1-likeprovided by MGI
    Primary source
    MGI:MGI:2444804
    See related
    Ensembl:ENSMUSG00000061755
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    FAM44A; AI853319; mKIAA1327; A230054D04Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 6.0), cerebellum adult (RPKM 5.4) and 28 other tissues See more
    Orthologs

    Genomic context

    See Bod1l in Genome Data Viewer
    Location:
    5; 5 B3
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (41787538..41844362, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (42178777..42235554, complement)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene polymerase (RNA) III (DNA directed) polypeptide F pseudogene Neighboring gene predicted gene, 46910 Neighboring gene NK3 homeobox 2 Neighboring gene tubulin polyglutamylase complex subunit 2 pseudogene Neighboring gene microRNA 6414

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    DNA repair IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to DNA damage stimulus ISO
    Inferred from Sequence Orthology
    more info
     
    replication fork processing ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    biorientation of chromosomes in cell division protein 1-like 1
    Names
    family with sequence similarity 44, member A

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081422.3NP_001074891.1  biorientation of chromosomes in cell division protein 1-like 1 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC102858, AC157932
      Consensus CDS
      CCDS39079.1
      UniProtKB/Swiss-Prot
      E9Q6J5
      Related
      ENSMUSP00000058618.7, ENSMUST00000050556.10
      Conserved Domains (2) summary
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
      pfam10310
      Location:183280
      DUF2413; Protein of unknown function (DUF2413)
    2. NM_001310601.1NP_001297530.1  biorientation of chromosomes in cell division protein 1-like 1 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 3' coding region compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AC102858, AC157932
      Consensus CDS
      CCDS80273.1
      UniProtKB/Swiss-Prot
      E9Q6J5
      Related
      ENSMUSP00000144359.1, ENSMUST00000202908.1
      Conserved Domains (2) summary
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
      pfam10310
      Location:183280
      DUF2413; Protein of unknown function (DUF2413)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      41787538..41844362 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006504050.3XP_006504113.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X1

      Conserved Domains (2) summary
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
      pfam10310
      Location:183280
      DUF2413; Protein of unknown function (DUF2413)
    2. XM_017321065.1XP_017176554.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X9

    3. XM_006504055.3XP_006504118.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X7

      Conserved Domains (2) summary
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
      pfam10310
      Location:183280
      DUF2413; Protein of unknown function (DUF2413)
    4. XM_017321064.1XP_017176553.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X8

    5. XM_006504054.3XP_006504117.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X6

      Conserved Domains (2) summary
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
      pfam10310
      Location:183280
      DUF2413; Protein of unknown function (DUF2413)
    6. XM_017321063.1XP_017176552.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X5

    7. XM_017321062.1XP_017176551.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X4

    8. XM_006504053.3XP_006504116.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X3

      Conserved Domains (2) summary
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
      pfam10310
      Location:183280
      DUF2413; Protein of unknown function (DUF2413)
    9. XM_006504051.3XP_006504114.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X2

      Conserved Domains (2) summary
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
      pfam10310
      Location:183280
      DUF2413; Protein of unknown function (DUF2413)
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