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    Bod1l biorientation of chromosomes in cell division 1-like [ Mus musculus (house mouse) ]

    Gene ID: 665775, updated on 23-Jun-2021

    Summary

    Official Symbol
    Bod1lprovided by MGI
    Official Full Name
    biorientation of chromosomes in cell division 1-likeprovided by MGI
    Primary source
    MGI:MGI:2444804
    See related
    Ensembl:ENSMUSG00000061755
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    FAM44A; AI853319; mKIAA1327; A230054D04Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 6.0), cerebellum adult (RPKM 5.4) and 28 other tissues See more
    Orthologs
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    Try the new Transcript table

    Genomic context

    See Bod1l in Genome Data Viewer
    Location:
    5; 5 B3
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (41944881..42001695, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (41787538..41844355, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (42178777..42235554, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene polymerase (RNA) III (DNA directed) polypeptide F pseudogene Neighboring gene predicted gene, 46910 Neighboring gene NK3 homeobox 2 Neighboring gene tubulin polyglutamylase complex subunit 2 pseudogene Neighboring gene microRNA 6414

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein phosphatase 2A binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables protein phosphatase inhibitor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA repair IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cellular response to DNA damage stimulus ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of phosphoprotein phosphatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in replication fork processing ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    part_of outer kinetochore IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    is_active_in spindle microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    is_active_in spindle pole IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    biorientation of chromosomes in cell division protein 1-like 1
    Names
    family with sequence similarity 44, member A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081422.3NP_001074891.1  biorientation of chromosomes in cell division protein 1-like 1 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC102858, AC157932
      Consensus CDS
      CCDS39079.1
      UniProtKB/Swiss-Prot
      E9Q6J5
      Related
      ENSMUSP00000058618.8, ENSMUST00000050556.11
      Conserved Domains (2) summary
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
      pfam10310
      Location:183280
      DUF2413; Protein of unknown function (DUF2413)
    2. NM_001310601.1NP_001297530.1  biorientation of chromosomes in cell division protein 1-like 1 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 3' coding region compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AC102858, AC157932
      Consensus CDS
      CCDS80273.1
      UniProtKB/Swiss-Prot
      E9Q6J5
      Related
      ENSMUSP00000144359.2, ENSMUST00000202908.2
      Conserved Domains (2) summary
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
      pfam10310
      Location:183280
      DUF2413; Protein of unknown function (DUF2413)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      41944881..42001695 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006504050.5XP_006504113.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X1

      Conserved Domains (2) summary
      PTZ00121
      Location:3031041
      PTZ00121; MAEBL; Provisional
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
    2. XM_017321065.1XP_017176554.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X10

      Conserved Domains (2) summary
      PTZ00121
      Location:3031041
      PTZ00121; MAEBL; Provisional
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
    3. XM_006504055.5XP_006504118.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X8

      Conserved Domains (2) summary
      PTZ00121
      Location:3031041
      PTZ00121; MAEBL; Provisional
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
    4. XM_017321064.1XP_017176553.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X9

      Conserved Domains (2) summary
      PTZ00121
      Location:3031041
      PTZ00121; MAEBL; Provisional
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
    5. XM_006504054.5XP_006504117.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X7

      Conserved Domains (2) summary
      PTZ00121
      Location:3031041
      PTZ00121; MAEBL; Provisional
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
    6. XM_017321063.1XP_017176552.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X6

      Conserved Domains (2) summary
      PTZ00121
      Location:3031041
      PTZ00121; MAEBL; Provisional
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
    7. XM_036165408.1XP_036021301.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X4

      Conserved Domains (2) summary
      PTZ00121
      Location:3031041
      PTZ00121; MAEBL; Provisional
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
    8. XM_017321062.1XP_017176551.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X5

      Conserved Domains (2) summary
      PTZ00121
      Location:3031041
      PTZ00121; MAEBL; Provisional
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
    9. XM_006504053.3XP_006504116.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X3

      Conserved Domains (2) summary
      PTZ00121
      Location:3031041
      PTZ00121; MAEBL; Provisional
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
    10. XM_006504051.3XP_006504114.1  biorientation of chromosomes in cell division protein 1-like 1 isoform X2

      Conserved Domains (2) summary
      PTZ00121
      Location:3031041
      PTZ00121; MAEBL; Provisional
      pfam05205
      Location:55148
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
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