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    Gdpd1 glycerophosphodiester phosphodiesterase domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 66569, updated on 23-Jun-2021

    Summary

    Official Symbol
    Gdpd1provided by MGI
    Official Full Name
    glycerophosphodiester phosphodiesterase domain containing 1provided by MGI
    Primary source
    MGI:MGI:1913819
    See related
    Ensembl:ENSMUSG00000061666
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2610020H15Rik
    Expression
    Broad expression in large intestine adult (RPKM 61.4), testis adult (RPKM 41.0) and 15 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Gdpd1 in Genome Data Viewer
    Location:
    11; 11 C
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (86924620..86964963, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (87033794..87074137, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (86847296..86887639, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene yippee like 2 Neighboring gene predicted gene, 51915 Neighboring gene predicted gene, 22387 Neighboring gene SMG8 nonsense mediated mRNA decay factor Neighboring gene proline rich 11

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables lysophospholipase activity EXP
    Inferred from Experiment
    more info
    PubMed 
    enables lysophospholipase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables lysophospholipase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables lysophospholipase activity ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables phosphoric diester hydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables phosphoric diester hydrolase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables phosphoric diester hydrolase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables phosphoric diester hydrolase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in endoplasmic reticulum membrane TAS
    Traceable Author Statement
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    lysophospholipase D GDPD1
    Names
    glycerophosphodiester phosphodiesterase 4
    glycerophosphodiester phosphodiesterase domain-containing protein 1
    NP_079914.1
    XP_036012792.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025638.2NP_079914.1  lysophospholipase D GDPD1

      See identical proteins and their annotated locations for NP_079914.1

      Status: VALIDATED

      Source sequence(s)
      AK013864, AK039183, BY282485, BY697784, CA451251
      Consensus CDS
      CCDS25206.1
      UniProtKB/Swiss-Prot
      Q9CRY7
      Related
      ENSMUSP00000020804.8, ENSMUST00000020804.8
      Conserved Domains (1) summary
      cd08612
      Location:14311
      GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      86924620..86964963 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036156899.1XP_036012792.1  lysophospholipase D GDPD1 isoform X1

      Conserved Domains (1) summary
      cd08612
      Location:1242
      GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins
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