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    Fam107b family with sequence similarity 107, member B [ Mus musculus (house mouse) ]

    Gene ID: 66540, updated on 5-Aug-2018

    Summary

    Official Symbol
    Fam107bprovided by MGI
    Official Full Name
    family with sequence similarity 107, member Bprovided by MGI
    Primary source
    MGI:MGI:1913790
    See related
    Ensembl:ENSMUSG00000026655 Vega:OTTMUSG00000010781
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA589595; AA959793; AI132312; 3110001A13Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 16.4), testis adult (RPKM 14.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Fam107b in Genome Data Viewer
    Location:
    2; 2 A1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (3704812..3782142)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (3630730..3699406)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108168726 Neighboring gene presenilin associated, rhomboid-like pseudogene Neighboring gene predicted gene, 36031 Neighboring gene FERM domain containing 4A Neighboring gene polypyrimidine tract-binding protein 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    sensory perception of sound IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    protein FAM107B
    Names
    novel DUF1151 domain containing protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025626.4NP_079902.1  protein FAM107B

      See identical proteins and their annotated locations for NP_079902.1

      Status: PROVISIONAL

      Source sequence(s)
      AK032875
      Consensus CDS
      CCDS15655.1
      UniProtKB/Swiss-Prot
      Q3TGF2
      Related
      ENSMUSP00000027965.4, OTTMUSP00000011559, ENSMUST00000027965.10, OTTMUST00000025210
      Conserved Domains (1) summary
      pfam06625
      Location:8120
      DUF1151; Protein of unknown function (DUF1151)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      3704812..3782142
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006497518.1XP_006497581.1  protein FAM107B isoform X1

      Conserved Domains (1) summary
      pfam06625
      Location:60172
      DUF1151; Protein of unknown function (DUF1151)
    2. XM_011238984.2XP_011237286.1  protein FAM107B isoform X4

      Conserved Domains (1) summary
      pfam06625
      Location:32144
      DUF1151; Protein of unknown function (DUF1151)
    3. XM_006497519.3XP_006497582.1  protein FAM107B isoform X2

      Conserved Domains (1) summary
      pfam06625
      Location:38150
      DUF1151; Protein of unknown function (DUF1151)
    4. XM_006497520.3XP_006497583.1  protein FAM107B isoform X3

      Related
      ENSMUSP00000110704.2, OTTMUSP00000062134, ENSMUST00000115052.8, OTTMUST00000111148
      Conserved Domains (1) summary
      pfam06625
      Location:36148
      DUF1151; Protein of unknown function (DUF1151)
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