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    Srp54b signal recognition particle 54B [ Mus musculus (house mouse) ]

    Gene ID: 665155, updated on 23-Jun-2021

    Summary

    Official Symbol
    Srp54bprovided by MGI
    Official Full Name
    signal recognition particle 54Bprovided by MGI
    Primary source
    MGI:MGI:3714357
    See related
    Ensembl:ENSMUSG00000112449
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in placenta adult (RPKM 45.2), bladder adult (RPKM 37.3) and 27 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Srp54b in Genome Data Viewer
    Location:
    12; 12 C1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (55201889..55235998)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (55155104..55189213)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (56256091..56290200)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene signal recognition particle 54A Neighboring gene family with sequence similarity 177, member A Neighboring gene predicted gene 2436 Neighboring gene family with sequence similarity 177 member A2 Neighboring gene predicted gene 2446 Neighboring gene signal recognition particle 54C

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables 7S RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables GDP binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables GTP binding ISO
    Inferred from Sequence Orthology
    more info
     
    contributes_to GTPase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables GTPase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables endoplasmic reticulum signal peptide binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in granulocyte differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein targeting to ER ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    part_of signal recognition particle, endoplasmic reticulum targeting ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    signal recognition particle 54 kDa protein
    Names
    SRP54
    NP_001093579.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100109.1NP_001093579.1  signal recognition particle 54 kDa protein

      See identical proteins and their annotated locations for NP_001093579.1

      Status: PROVISIONAL

      Source sequence(s)
      AK136033
      Consensus CDS
      CCDS49065.1
      UniProtKB/Swiss-Prot
      P14576
      Related
      ENSMUSP00000106336.3, ENSMUST00000110708.4
      Conserved Domains (1) summary
      TIGR01425
      Location:2430
      SRP54_euk; signal recognition particle protein SRP54

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      55201889..55235998
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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