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    Rpl36al ribosomal protein L36A-like [ Mus musculus (house mouse) ]

    Gene ID: 66483, updated on 7-Jan-2018

    Summary

    Official Symbol
    Rpl36alprovided by MGI
    Official Full Name
    ribosomal protein L36A-likeprovided by MGI
    Primary source
    MGI:MGI:1913733
    See related
    Ensembl:ENSMUSG00000049751 Vega:OTTMUSG00000023813
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    RPL36A; 2410038A03Rik
    Expression
    Broad expression in liver E14 (RPKM 241.6), placenta adult (RPKM 239.0) and 25 other tissues See more
    Orthologs

    Genomic context

    See Rpl36al in Genome Data Viewer
    Location:
    12; 12 C2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (69182734..69184067, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (70283721..70285054, complement)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene 7S RNA 1 Neighboring gene leucine rich repeat protein 1 Neighboring gene mannoside acetylglucosaminyltransferase 2 Neighboring gene dynein, axonemal assembly factor 2 Neighboring gene RIKEN cDNA 9330151L19 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    response to organic substance IDA
    Inferred from Direct Assay
    more info
    PubMed 
    response to retinoic acid IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    60S ribosomal protein L36a-like

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025589.4NP_079865.1  60S ribosomal protein L36a-like

      See identical proteins and their annotated locations for NP_079865.1

      Status: VALIDATED

      Source sequence(s)
      AK153544, AV513698, BU938789
      Consensus CDS
      CCDS25946.1
      UniProtKB/Swiss-Prot
      P83882
      UniProtKB/TrEMBL
      Q5M9P1
      Related
      ENSMUSP00000059766.6, OTTMUSP00000028145, ENSMUST00000054544.6, OTTMUST00000058172
      Conserved Domains (1) summary
      PTZ00157
      Location:186
      PTZ00157; 60S ribosomal protein L36a; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      69182734..69184067 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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