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    Rpl15 ribosomal protein L15 [ Mus musculus (house mouse) ]

    Gene ID: 66480, updated on 12-Aug-2018

    Summary

    Official Symbol
    Rpl15provided by MGI
    Official Full Name
    ribosomal protein L15provided by MGI
    Primary source
    MGI:MGI:1913730
    See related
    Ensembl:ENSMUSG00000012405 Vega:OTTMUSG00000022948
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2510008H07Rik
    Expression
    Ubiquitous expression in liver E14 (RPKM 213.0), CNS E11.5 (RPKM 200.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rpl15 in Genome Data Viewer
    Location:
    14 A2; 14
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (18267823..18271024, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (19100337..19103500, complement)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene nuclear receptor subfamily 1, group D, member 2 Neighboring gene predicted gene 7084 Neighboring gene NFKB inhibitor interacting Ras-like protein 1 Neighboring gene ubiquitin-conjugating enzyme E2E 1 Neighboring gene predicted gene, 41098

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC107261

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    cytoplasmic translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    A band ISO
    Inferred from Sequence Orthology
    more info
     
    cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001359897.1NP_001346826.1  60S ribosomal protein L15

      Status: VALIDATED

      Source sequence(s)
      AK168807, BU757479, BY169862, CJ093984, CU024892, CX218985
      Conserved Domains (1) summary
      pfam00827
      Location:2191
      Ribosomal_L15e; Ribosomal L15
    2. NM_001359899.1NP_001346828.1  60S ribosomal protein L15

      Status: VALIDATED

      Source sequence(s)
      AK168807, BU757479, BY169862, CU024892, CX218985
      Conserved Domains (1) summary
      pfam00827
      Location:2191
      Ribosomal_L15e; Ribosomal L15
    3. NM_025586.3NP_079862.1  60S ribosomal protein L15

      See identical proteins and their annotated locations for NP_079862.1

      Status: VALIDATED

      Source sequence(s)
      AK168807, AW491775, BC087917
      Consensus CDS
      CCDS36812.1
      UniProtKB/Swiss-Prot
      Q9CZM2
      UniProtKB/TrEMBL
      Q5M8Q0
      Related
      ENSMUSP00000079163.7, OTTMUSP00000026396, ENSMUST00000080281.13, OTTMUST00000055191
      Conserved Domains (1) summary
      pfam00827
      Location:2191
      Ribosomal_L15e; Ribosomal L15

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      18267823..18271024 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006518081.3XP_006518144.1  60S ribosomal protein L15 isoform X1

      UniProtKB/Swiss-Prot
      Q9CZM2
      UniProtKB/TrEMBL
      Q5M8Q0
      Related
      ENSMUSP00000078388.4, OTTMUSP00000026399, ENSMUST00000079419.11, OTTMUST00000055194
      Conserved Domains (1) summary
      pfam00827
      Location:2191
      Ribosomal_L15e; Ribosomal L15
    2. XM_006518080.3XP_006518143.1  60S ribosomal protein L15 isoform X1

      UniProtKB/Swiss-Prot
      Q9CZM2
      UniProtKB/TrEMBL
      Q5M8Q0
      Related
      ENSMUSP00000098362.2, OTTMUSP00000026397, ENSMUST00000100799.8, OTTMUST00000055192
      Conserved Domains (1) summary
      pfam00827
      Location:2191
      Ribosomal_L15e; Ribosomal L15
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