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    Usmg5 upregulated during skeletal muscle growth 5 [ Mus musculus (house mouse) ]

    Gene ID: 66477, updated on 21-Oct-2018

    Summary

    Official Symbol
    Usmg5provided by MGI
    Official Full Name
    upregulated during skeletal muscle growth 5provided by MGI
    Primary source
    MGI:MGI:1891435
    See related
    Ensembl:ENSMUSG00000071528
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Atp5md; 2010301L15Rik
    Expression
    Broad expression in placenta adult (RPKM 151.0), CNS E18 (RPKM 144.4) and 22 other tissues See more
    Orthologs

    Genomic context

    See Usmg5 in Genome Data Viewer
    Location:
    19; 19 C3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (47083471..47090625, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (47157961..47165115, complement)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene 5'-nucleotidase, cytosolic II Neighboring gene internexin neuronal intermediate filament protein, alpha Neighboring gene polycomb group ring finger 6 Neighboring gene TATA-box binding protein associated factor 5 Neighboring gene programmed cell death 11 Neighboring gene calcium homeostasis modulator family member 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrial inner membrane HDA PubMed 
    mitochondrial proton-transporting ATP synthase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mitochondrial proton-transporting ATP synthase complex ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrion HDA PubMed 
    mitochondrion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    up-regulated during skeletal muscle growth protein 5
    Names
    ATP synthase membrane subunit DAPIT
    diabetes-associated protein in insulin-sensitive tissues

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023211.5NP_075700.2  up-regulated during skeletal muscle growth protein 5

      Status: VALIDATED

      Source sequence(s)
      AC124724
      Consensus CDS
      CCDS38014.1
      UniProtKB/Swiss-Prot
      Q78IK2
      Related
      ENSMUSP00000093713.3, ENSMUST00000096014.3
      Conserved Domains (1) summary
      pfam14960
      Location:151
      ATP_synth_reg; ATP synthase regulation

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      47083471..47090625 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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