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    Sys1 SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae) [ Mus musculus (house mouse) ]

    Gene ID: 66460, updated on 12-Aug-2018

    Summary

    Official Symbol
    Sys1provided by MGI
    Official Full Name
    SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)provided by MGI
    Primary source
    MGI:MGI:1913710
    See related
    Ensembl:ENSMUSG00000045503 Vega:OTTMUSG00000001089
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C87389; AI266964; 2610042O14Rik
    Expression
    Ubiquitous expression in duodenum adult (RPKM 87.4), ovary adult (RPKM 57.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See Sys1 in Genome Data Viewer
    Location:
    2; 2 H3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (164456981..164479637)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (164286471..164291010)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene matrilin 4 Neighboring gene recombination signal binding protein for immunoglobulin kappa J region-like Neighboring gene syndecan 4 Neighboring gene transformation related protein 53 target 5 Neighboring gene dysbindin (dystrobrevin binding protein 1) domain containing 2 Neighboring gene predicted gene 10725 Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class T

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    Golgi to endosome transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Golgi to plasma membrane protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein localization to Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    protein SYS1 homolog
    Names
    Sys1 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025575.3NP_079851.2  protein SYS1 homolog

      See identical proteins and their annotated locations for NP_079851.2

      Status: VALIDATED

      Source sequence(s)
      AK003071, AK005249, AK007882, BE951157
      Consensus CDS
      CCDS50793.1
      UniProtKB/Swiss-Prot
      Q78S06
      Related
      ENSMUSP00000072275.4, ENSMUST00000072452.10
      Conserved Domains (1) summary
      pfam09801
      Location:5148
      SYS1; Integral membrane protein S linking to the trans Golgi network

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      164456981..164479637
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011239733.1XP_011238035.1  protein SYS1 homolog isoform X1

      See identical proteins and their annotated locations for XP_011238035.1

      UniProtKB/Swiss-Prot
      Q78S06
      Related
      ENSMUSP00000104976.1, OTTMUSP00000001041, ENSMUST00000109352.7, OTTMUST00000002142
      Conserved Domains (1) summary
      pfam09801
      Location:5148
      SYS1; Integral membrane protein S linking to the trans Golgi network
    2. XM_011239732.2XP_011238034.1  protein SYS1 homolog isoform X1

      See identical proteins and their annotated locations for XP_011238034.1

      UniProtKB/Swiss-Prot
      Q78S06
      Conserved Domains (1) summary
      pfam09801
      Location:5148
      SYS1; Integral membrane protein S linking to the trans Golgi network

    RNA

    1. XR_374503.2 RNA Sequence

    2. XR_374501.2 RNA Sequence

    3. XR_866332.1 RNA Sequence

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