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    Sys1 SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae) [ Mus musculus (house mouse) ]

    Gene ID: 66460, updated on 23-Jun-2021

    Summary

    Official Symbol
    Sys1provided by MGI
    Official Full Name
    SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)provided by MGI
    Primary source
    MGI:MGI:1913710
    See related
    Ensembl:ENSMUSG00000045503
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C87389; AI266964; 2610042O14Rik
    Expression
    Ubiquitous expression in duodenum adult (RPKM 87.4), ovary adult (RPKM 57.8) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Sys1 in Genome Data Viewer
    Location:
    2; 2 H3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (164297736..164322141)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (164456930..164480221)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (164286471..164291010)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene matrilin 4 Neighboring gene recombination signal binding protein for immunoglobulin kappa J region-like Neighboring gene syndecan 4 Neighboring gene transformation related protein 53 target 5 Neighboring gene dysbindin (dystrobrevin binding protein 1) domain containing 2 Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class T Neighboring gene predicted gene, 36090

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in Golgi to endosome transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in Golgi to plasma membrane protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in protein localization to Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in integral component of Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    protein SYS1 homolog
    Names
    Sys1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025575.3NP_079851.2  protein SYS1 homolog

      See identical proteins and their annotated locations for NP_079851.2

      Status: VALIDATED

      Source sequence(s)
      AK003071, AK005249, AK007882, BE951157
      Consensus CDS
      CCDS50793.1
      UniProtKB/Swiss-Prot
      Q78S06
      Related
      ENSMUSP00000072275.5, ENSMUST00000072452.11
      Conserved Domains (1) summary
      pfam09801
      Location:5148
      SYS1; Integral membrane protein S linking to the trans Golgi network

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      164297736..164322141
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036162452.1XP_036018345.1  protein SYS1 homolog isoform X1

      Conserved Domains (1) summary
      pfam09801
      Location:5148
      SYS1; Integral membrane protein S linking to the trans Golgi network
    2. XM_011239733.3XP_011238035.1  protein SYS1 homolog isoform X1

      See identical proteins and their annotated locations for XP_011238035.1

      UniProtKB/Swiss-Prot
      Q78S06
      Related
      ENSMUSP00000104976.2, ENSMUST00000109352.8
      Conserved Domains (1) summary
      pfam09801
      Location:5148
      SYS1; Integral membrane protein S linking to the trans Golgi network
    3. XM_036162454.1XP_036018347.1  protein SYS1 homolog isoform X1

      Conserved Domains (1) summary
      pfam09801
      Location:5148
      SYS1; Integral membrane protein S linking to the trans Golgi network
    4. XM_011239732.4XP_011238034.1  protein SYS1 homolog isoform X1

      See identical proteins and their annotated locations for XP_011238034.1

      UniProtKB/Swiss-Prot
      Q78S06
      Conserved Domains (1) summary
      pfam09801
      Location:5148
      SYS1; Integral membrane protein S linking to the trans Golgi network

    RNA

    1. XR_003953683.1 RNA Sequence

    2. XR_374503.3 RNA Sequence

    3. XR_374501.3 RNA Sequence

      Related
      ENSMUST00000138268.8
    4. XR_866332.2 RNA Sequence

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