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    Cnpy4 canopy FGF signaling regulator 4 [ Mus musculus (house mouse) ]

    Gene ID: 66455, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cnpy4provided by MGI
    Official Full Name
    canopy FGF signaling regulator 4provided by MGI
    Primary source
    MGI:MGI:1913705
    See related
    Ensembl:ENSMUSG00000036968
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2610019P18Rik
    Expression
    Broad expression in CNS E11.5 (RPKM 23.1), limb E14.5 (RPKM 12.8) and 19 other tissues See more
    Orthologs

    Genomic context

    See Cnpy4 in Genome Data Viewer
    Location:
    5; 5 G2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (138187535..138193894)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (138628763..138635122)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene microRNA 106b Neighboring gene minichromosome maintenance complex component 7 Neighboring gene adaptor-related protein complex AP-4, mu 1 Neighboring gene TATA-box binding protein associated factor 6 Neighboring gene metallo-beta-lactamase domain containing 1 Neighboring gene predicted gene 454

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    signaling receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    signaling receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    positive regulation of protein localization to plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of protein localization ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein canopy homolog 4
    Names
    canopy 4 homolog
    protein associated with Tlr4

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_178612.4NP_848727.1  protein canopy homolog 4 precursor

      See identical proteins and their annotated locations for NP_848727.1

      Status: PROVISIONAL

      Source sequence(s)
      AK051562
      Consensus CDS
      CCDS39341.1
      UniProtKB/Swiss-Prot
      Q8BQ47
      Related
      ENSMUSP00000106559.2, ENSMUST00000110934.8
      Conserved Domains (1) summary
      pfam11938
      Location:43191
      DUF3456; TLR4 regulator and MIR-interacting MSAP

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      138187535..138193894
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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