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    Exosc7 exosome component 7 [ Mus musculus (house mouse) ]

    Gene ID: 66446, updated on 19-Mar-2019

    Summary

    Official Symbol
    Exosc7provided by MGI
    Official Full Name
    exosome component 7provided by MGI
    Primary source
    MGI:MGI:1913696
    See related
    Ensembl:ENSMUSG00000025785
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AV212732; mKIAA0116; 2610002K22Rik
    Expression
    Ubiquitous expression in liver E14 (RPKM 25.3), CNS E11.5 (RPKM 23.4) and 26 other tissues See more
    Orthologs

    Genomic context

    See Exosc7 in Genome Data Viewer
    Location:
    9; 9 F4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (123113231..123136129)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (123022349..123045247)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene transmembrane protein 42 Neighboring gene transglutaminase 4 (prostate) Neighboring gene zinc finger, DHHC domain containing 3 Neighboring gene C-type lectin domain family 3, member b Neighboring gene CUB domain containing protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    AU-rich element binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    U1 snRNA 3'-end processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    U4 snRNA 3'-end processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    U5 snRNA 3'-end processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nuclear mRNA surveillance IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nuclear polyadenylation-dependent mRNA catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nuclear polyadenylation-dependent rRNA catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nuclear polyadenylation-dependent tRNA catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    rRNA catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    rRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasmic exosome (RNase complex) IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    exosome (RNase complex) ISO
    Inferred from Sequence Orthology
    more info
     
    nuclear exosome (RNase complex) IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    exosome complex exonuclease RRP42
    Names
    ribosomal RNA-processing protein 42

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081188.1NP_001074657.1  exosome complex exonuclease RRP42

      See identical proteins and their annotated locations for NP_001074657.1

      Status: PROVISIONAL

      Source sequence(s)
      AC134248
      Consensus CDS
      CCDS40815.1
      UniProtKB/Swiss-Prot
      Q9D0M0
      Related
      ENSMUSP00000026891.4, ENSMUST00000026891.4
      Conserved Domains (1) summary
      cd11367
      Location:5276
      RNase_PH_RRP42; RRP42 subunit of eukaryotic exosome

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      123113231..123136129
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006512208.1XP_006512271.1  exosome complex exonuclease RRP42 isoform X2

      Conserved Domains (1) summary
      cl03114
      Location:18155
      RNase_PH; RNase PH-like 3'-5' exoribonucleases
    2. XM_006512207.3XP_006512270.1  exosome complex exonuclease RRP42 isoform X1

      See identical proteins and their annotated locations for XP_006512270.1

      Conserved Domains (1) summary
      cd11367
      Location:8198
      RNase_PH_RRP42; RRP42 subunit of eukaryotic exosome
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