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    2410004B18Rik RIKEN cDNA 2410004B18 gene [ Mus musculus (house mouse) ]

    Gene ID: 66421, updated on 31-Jan-2019

    Summary

    Official Symbol
    2410004B18Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2410004B18 geneprovided by MGI
    Primary source
    MGI:MGI:1913671
    See related
    Ensembl:ENSMUSG00000036873
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930572C24Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 15.2), CNS E14 (RPKM 12.3) and 28 other tissues See more
    Orthologs

    Genomic context

    See 2410004B18Rik in Genome Data Viewer
    Location:
    3; 3 H2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (145938004..145944829)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (145600996..145607239)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene dimethylarginine dimethylaminohydrolase 1 Neighboring gene ribosomal protein L36A, pseudogene 2 Neighboring gene predicted gene, 35187 Neighboring gene B cell leukemia/lymphoma 10 Neighboring gene predicted gene, 35352 Neighboring gene synapse defective 1, Rho GTPase, homolog 2 (C. elegans) Neighboring gene predicted gene, 40166

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Clone Names

    • MGC144272

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    UPF0690 protein C1orf52 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356284.1NP_001343213.1  UPF0690 protein C1orf52 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC123684
      Conserved Domains (1) summary
      pfam15559
      Location:33125
      DUF4660; Domain of unknown function (DUF4660)
    2. NM_025555.5NP_079831.1  UPF0690 protein C1orf52 homolog isoform 1

      See identical proteins and their annotated locations for NP_079831.1

      Status: VALIDATED

      Source sequence(s)
      AC123684
      Consensus CDS
      CCDS17898.1
      UniProtKB/Swiss-Prot
      Q9CWU4
      Related
      ENSMUSP00000045376.7, ENSMUST00000039571.13
      Conserved Domains (1) summary
      pfam15559
      Location:33125
      DUF4660; Domain of unknown function (DUF4660)

    RNA

    1. NR_151445.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC123684, AK077565
    2. NR_151446.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC123684, AW124724

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      145938004..145944829
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006501885.3XP_006501948.2  UPF0690 protein C1orf52 homolog isoform X1

      Conserved Domains (1) summary
      pfam15559
      Location:33125
      DUF4660; Domain of unknown function (DUF4660)
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