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    Rsl1d1 ribosomal L1 domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 66409, updated on 27-Nov-2024

    Summary

    Official Symbol
    Rsl1d1provided by MGI
    Official Full Name
    ribosomal L1 domain containing 1provided by MGI
    Primary source
    MGI:MGI:1913659
    See related
    Ensembl:ENSMUSG00000005846 AllianceGenome:MGI:1913659
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    pBK1; 2410005K20Rik
    Summary
    Predicted to enable mRNA 3'-UTR binding activity and mRNA 5'-UTR binding activity. Predicted to be involved in regulation of apoptotic process and regulation of cellular senescence. Predicted to act upstream of or within regulation of protein localization. Located in nucleolus. Is expressed in several structures, including eye; genitourinary system; liver; lung; and spleen. Orthologous to human RSL1D1 (ribosomal L1 domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in CNS E11.5 (RPKM 40.8), liver E14 (RPKM 32.8) and 19 other tissues See more
    Orthologs
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    Genomic context

    See Rsl1d1 in Genome Data Viewer
    Location:
    16 A1; 16 6.37 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (11010901..11021156, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (11193037..11203292, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930509G22 gene Neighboring gene 40S ribosomal protein S2 pseudogene Neighboring gene Wdr45 like pseudogene Neighboring gene RIKEN cDNA 2610020C07 gene Neighboring gene STARR-positive B cell enhancer ABC_E7427 Neighboring gene G1 to S phase transition 1 Neighboring gene predicted gene, 57631 Neighboring gene STARR-positive B cell enhancer ABC_E8617

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2)  1 citation
    • Gene trapped (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables mRNA 3'-UTR binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables mRNA 5'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables mRNA 5'-UTR binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in regulation of apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of apoptotic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of cellular senescence ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of cellular senescence ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    acts_upstream_of_or_within regulation of protein localization ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in chromosome ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    ribosomal L1 domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025546.2NP_079822.1  ribosomal L1 domain-containing protein 1

      See identical proteins and their annotated locations for NP_079822.1

      Status: PROVISIONAL

      Source sequence(s)
      AK075933
      Consensus CDS
      CCDS49763.1
      UniProtKB/Swiss-Prot
      Q8BVY0, Q8K235
      UniProtKB/TrEMBL
      Q3TS64
      Related
      ENSMUSP00000113431.2, ENSMUST00000119953.2
      Conserved Domains (1) summary
      pfam00687
      Location:40259
      Ribosomal_L1; Ribosomal protein L1p/L10e family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      11010901..11021156 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)