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    Rsl1d1 ribosomal L1 domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 66409, updated on 23-Jun-2021

    Summary

    Official Symbol
    Rsl1d1provided by MGI
    Official Full Name
    ribosomal L1 domain containing 1provided by MGI
    Primary source
    MGI:MGI:1913659
    See related
    Ensembl:ENSMUSG00000005846
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    pBK1; C76439; 2410005K20Rik
    Expression
    Broad expression in CNS E11.5 (RPKM 40.8), liver E14 (RPKM 32.8) and 19 other tissues See more
    Orthologs
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    Genomic context

    See Rsl1d1 in Genome Data Viewer
    Location:
    16; 16 A1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (11010901..11021156, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (11193037..11203292, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (11193130..11203385, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930509G22 gene Neighboring gene 40S ribosomal protein S2 pseudogene Neighboring gene Wdr45 like pseudogene Neighboring gene RIKEN cDNA 2610020C07 gene Neighboring gene G1 to S phase transition 1 Neighboring gene uncharacterized LOC115488671

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables mRNA 3'-UTR binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables mRNA 5'-UTR binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in regulation of apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of cellular senescence ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of protein localization ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in chromosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ribosomal L1 domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025546.2NP_079822.1  ribosomal L1 domain-containing protein 1

      See identical proteins and their annotated locations for NP_079822.1

      Status: PROVISIONAL

      Source sequence(s)
      AK075933
      Consensus CDS
      CCDS49763.1
      UniProtKB/Swiss-Prot
      Q8BVY0
      Related
      ENSMUSP00000113431.2, ENSMUST00000119953.2
      Conserved Domains (1) summary
      pfam00687
      Location:40259
      Ribosomal_L1; Ribosomal protein L1p/L10e family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      11010901..11021156 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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