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    Tsfm Ts translation elongation factor, mitochondrial [ Mus musculus (house mouse) ]

    Gene ID: 66399, updated on 31-Jan-2019

    Summary

    Official Symbol
    Tsfmprovided by MGI
    Official Full Name
    Ts translation elongation factor, mitochondrialprovided by MGI
    Primary source
    MGI:MGI:1913649
    See related
    Ensembl:ENSMUSG00000040521
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EF-TS; EF-Tsmt; 2310050B20Rik; 9430024O13Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 24.4), ovary adult (RPKM 16.4) and 28 other tissues See more
    Orthologs

    Genomic context

    See Tsfm in Genome Data Viewer
    Location:
    10; 10 D3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (127022332..127030814, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (126459388..126467870, complement)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 Neighboring gene microRNA 546 Neighboring gene advillin Neighboring gene EEF1A lysine methyltransferase 3 Neighboring gene methyltransferase like 1 Neighboring gene cytochrome P450, family 27, subfamily b, polypeptide 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    translation elongation factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    mitochondrial translational elongation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of mitochondrial translation ISO
    Inferred from Sequence Orthology
    more info
     
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    translational elongation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    mitochondrial matrix IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mitochondrion HDA PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    elongation factor Ts, mitochondrial

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025537.3NP_079813.1  elongation factor Ts, mitochondrial precursor

      See identical proteins and their annotated locations for NP_079813.1

      Status: VALIDATED

      Source sequence(s)
      AC134329
      Consensus CDS
      CCDS24222.1
      UniProtKB/Swiss-Prot
      Q9CZR8
      Related
      ENSMUSP00000042134.4, ENSMUST00000040560.10
      Conserved Domains (3) summary
      PRK09377
      Location:42316
      tsf; elongation factor Ts; Provisional
      cd14275
      Location:4783
      UBA_EF-Ts; UBA domain found in elongation factor Ts (EF-Ts) from bacteria, chloroplasts and mitochondria of eukaryotes
      pfam00889
      Location:115316
      EF_TS; Elongation factor TS

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      127022332..127030814 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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