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    Commd5 COMM domain containing 5 [ Mus musculus (house mouse) ]

    Gene ID: 66398, updated on 31-Jan-2019

    Summary

    Official Symbol
    Commd5provided by MGI
    Official Full Name
    COMM domain containing 5provided by MGI
    Primary source
    MGI:MGI:1913648
    See related
    Ensembl:ENSMUSG00000055041
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Hcarg; AI854466; D15Ertd81e; 2310065H03Rik
    Expression
    Ubiquitous expression in colon adult (RPKM 18.1), ovary adult (RPKM 16.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See Commd5 in Genome Data Viewer
    Location:
    15 D3; 15 36.28 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (76899941..76901297)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (76730371..76731727)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene zinc finger protein 251 Neighboring gene zinc finger protein 7 Neighboring gene ribosomal protein L8 Neighboring gene zinc finger protein 647

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    COMM domain-containing protein 5
    Names
    hypertension-related, calcium regulated

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025536.2NP_079812.1  COMM domain-containing protein 5

      See identical proteins and their annotated locations for NP_079812.1

      Status: PROVISIONAL

      Source sequence(s)
      AK010045
      Consensus CDS
      CCDS27594.1
      UniProtKB/Swiss-Prot
      Q8R395
      UniProtKB/TrEMBL
      A0A0R4J0U7
      Related
      ENSMUSP00000069159.5, ENSMUST00000068407.5
      Conserved Domains (1) summary
      cd04753
      Location:115224
      Commd5_HCaRG; COMM_Domain containing protein 5, also called HCaRG (hypertension-related, calcium-regulated gene). HCaRG is a nuclear protein that might be involved in cell proliferation; it is negatively regulated by extracellular calcium concentration, and its basal ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      76899941..76901297
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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