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    Srp19 signal recognition particle 19 [ Mus musculus (house mouse) ]

    Gene ID: 66384, updated on 23-May-2018

    Summary

    Official Symbol
    Srp19provided by MGI
    Official Full Name
    signal recognition particle 19provided by MGI
    Primary source
    MGI:MGI:1913634
    See related
    Ensembl:ENSMUSG00000014504 Vega:OTTMUSG00000029748
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2310020D23Rik
    Expression
    Broad expression in placenta adult (RPKM 36.3), liver E14 (RPKM 32.8) and 24 other tissues See more
    Orthologs

    Genomic context

    See Srp19 in Genome Data Viewer
    Location:
    18; 18 B1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (34331121..34336599)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (34490799..34496253)

    Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41687 Neighboring gene predicted gene, 41686 Neighboring gene ribosomal protein L29 pseudogene Neighboring gene APC, WNT signaling pathway regulator Neighboring gene receptor accessory protein 5 Neighboring gene polycystic kidney disease 2-like 2 Neighboring gene SET translocation pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    7S RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    7S RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    contributes_to ribosome binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    SRP-dependent cotranslational protein targeting to membrane IEA
    Inferred from Electronic Annotation
    more info
     
    SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    SRP-dependent cotranslational protein targeting to membrane, translocation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    response to drug ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    signal recognition particle ISO
    Inferred from Sequence Orthology
    more info
     
    signal recognition particle, endoplasmic reticulum targeting IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    signal recognition particle, endoplasmic reticulum targeting ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    signal recognition particle 19 kDa protein
    NP_079803.2
    XP_006526218.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025527.3NP_079803.2  signal recognition particle 19 kDa protein

      See identical proteins and their annotated locations for NP_079803.2

      Status: VALIDATED

      Source sequence(s)
      AK004118, BX529045
      Consensus CDS
      CCDS37757.1
      UniProtKB/TrEMBL
      Q9D104
      Related
      ENSMUSP00000072386.3, OTTMUSP00000038265, ENSMUST00000072576.9, OTTMUST00000073826
      Conserved Domains (1) summary
      pfam01922
      Location:17115
      SRP19; SRP19 protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

      Range
      34331121..34336599
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006526155.1XP_006526218.1  signal recognition particle 19 kDa protein isoform X1

      See identical proteins and their annotated locations for XP_006526218.1

      UniProtKB/TrEMBL
      G5E8T3
      Related
      ENSMUSP00000112826.1, OTTMUSP00000038267, ENSMUST00000119329.7, OTTMUST00000073831
      Conserved Domains (1) summary
      pfam01922
      Location:1791
      SRP19; SRP19 protein
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