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    Rnf113a2 ring finger protein 113A2 [ Mus musculus (house mouse) ]

    Gene ID: 66381, updated on 31-Jan-2019

    Summary

    Official Symbol
    Rnf113a2provided by MGI
    Official Full Name
    ring finger protein 113A2provided by MGI
    Primary source
    MGI:MGI:1913631
    See related
    Ensembl:ENSMUSG00000098134
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rnf113a; AI426758; 2310020H19Rik

    Genomic context

    See Rnf113a2 in Genome Data Viewer
    Location:
    12; 12 D1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (84417200..84418578)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (85758150..85759528)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 161, member B Neighboring gene coenzyme Q6 monooxygenase Neighboring gene ectonucleoside triphosphate diphosphohydrolase 5 Neighboring gene basal body orientation factor 1 Neighboring gene aldehyde dehydrogenase family 6, subfamily A1 Neighboring gene lin-52 homolog (C. elegans)

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Clone Names

    • MGC144613

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ubiquitin-protein transferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    isopeptide cross-linking via N6-glycyl-L-lysine ISO
    Inferred from Sequence Orthology
    more info
     
    negative regulation of chemokine-mediated signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    protein ubiquitination ISO
    Inferred from Sequence Orthology
    more info
     
    snoRNA splicing IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    U2-type spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025525.2NP_079801.2  ring finger protein 113A2

      See identical proteins and their annotated locations for NP_079801.2

      Status: VALIDATED

      Source sequence(s)
      AA462834, AK009420, AK016795, BC058194
      Consensus CDS
      CCDS59575.1
      UniProtKB/TrEMBL
      Q14B01, Q9D7A3
      Related
      ENSMUSP00000138536.1, ENSMUST00000183146.1
      Conserved Domains (3) summary
      COG5152
      Location:57323
      COG5152; Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
      cd00162
      Location:261299
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      pfam00642
      Location:197223
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      84417200..84418578
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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