Format

Send to:

Choose Destination
    • Showing Current items.

    2310022A10Rik RIKEN cDNA 2310022A10 gene [ Mus musculus (house mouse) ]

    Gene ID: 66367, updated on 31-Jan-2019

    Summary

    Official Symbol
    2310022A10Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2310022A10 geneprovided by MGI
    Primary source
    MGI:MGI:1913617
    See related
    Ensembl:ENSMUSG00000049643
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in heart adult (RPKM 19.9), thymus adult (RPKM 16.0) and 28 other tissues See more
    Orthologs

    Genomic context

    See 2310022A10Rik in Genome Data Viewer
    Location:
    7; 7 A3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (27553260..27582099)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (28338314..28367118)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene homeodomain interacting protein kinase 4 Neighboring gene phospholipase D family, member 3 Neighboring gene predicted gene, 45975 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene thymoma viral proto-oncogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C19orf47 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001122767.1NP_001116239.1  uncharacterized protein C19orf47 homolog isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation at a downstream in-frame ATG and result in an isoform (2) with a distinct C-terminus and shorter N-terminus when compared to isoform 1.
      Source sequence(s)
      AK077369, BQ560353, BU555303
      UniProtKB/Swiss-Prot
      Q8R3Y5
      Related
      ENSMUSP00000139423.1, ENSMUST00000187032.1
      Conserved Domains (1) summary
      cd09531
      Location:872
      SAM_CS047; SAM domain of CS047 subfamily
    2. NM_175107.5NP_780316.3  uncharacterized protein C19orf47 homolog isoform 1

      See identical proteins and their annotated locations for NP_780316.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK077369, BB853451, BE854222, BQ560353, BU555303, BX522780
      Consensus CDS
      CCDS21026.1
      UniProtKB/Swiss-Prot
      Q8R3Y5
      UniProtKB/TrEMBL
      G5E8E3
      Related
      ENSMUSP00000066803.7, ENSMUST00000067386.13
      Conserved Domains (1) summary
      cd09531
      Location:3498
      SAM_CS047; SAM domain of CS047 subfamily

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      27553260..27582099
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017312231.1XP_017167720.1  uncharacterized protein C19orf47 homolog isoform X2

    2. XM_006540290.3XP_006540353.1  uncharacterized protein C19orf47 homolog isoform X1

      UniProtKB/TrEMBL
      A0A087WRI8
      Related
      ENSMUSP00000140651.1, ENSMUST00000187960.6
      Conserved Domains (1) summary
      cd09531
      Location:3498
      SAM_CS047; SAM domain of CS047 subfamily

    RNA

    1. XR_391092.2 RNA Sequence

    Support Center