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    Atp6v1c1 ATPase, H+ transporting, lysosomal V1 subunit C1 [ Mus musculus (house mouse) ]

    Gene ID: 66335, updated on 31-Jan-2019

    Summary

    Official Symbol
    Atp6v1c1provided by MGI
    Official Full Name
    ATPase, H+ transporting, lysosomal V1 subunit C1provided by MGI
    Primary source
    MGI:MGI:1913585
    See related
    Ensembl:ENSMUSG00000022295
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    U13839; 1700025B18Rik
    Expression
    Ubiquitous expression in cortex adult (RPKM 58.2), frontal lobe adult (RPKM 53.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Atp6v1c1 in Genome Data Viewer
    Location:
    15; 15 B3.1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (38661904..38692444)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (38591659..38622199)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2310043O21 gene Neighboring gene siah E3 ubiquitin protein ligase 1, pseudogene 2 Neighboring gene predicted gene, 41309 Neighboring gene predicted gene, 29697 Neighboring gene RIKEN cDNA 1100001I12 gene Neighboring gene predicted gene, 45924 Neighboring gene brain and acute leukemia, cytoplasmic

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    proton transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    proton-exporting ATPase activity, phosphorylative mechanism IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    proton-exporting ATPase activity, phosphorylative mechanism IDA
    Inferred from Direct Assay
    more info
    PubMed 
    proton-transporting ATPase activity, rotational mechanism IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    ATP hydrolysis coupled proton transport IEA
    Inferred from Electronic Annotation
    more info
     
    ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    apical part of cell ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasmic vesicle ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    proton-transporting V-type ATPase, V1 domain IEA
    Inferred from Electronic Annotation
    more info
     
    vacuolar proton-transporting V-type ATPase, V1 domain IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    V-type proton ATPase subunit C 1
    Names
    ATPase, H+ transporting, V1 subunit C, isoform 1
    V-ATPase subunit C 1
    vacuolar proton pump subunit C 1
    NP_079770.2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025494.3NP_079770.2  V-type proton ATPase subunit C 1

      See identical proteins and their annotated locations for NP_079770.2

      Status: VALIDATED

      Source sequence(s)
      AK151237, BB869068, BQ746792
      Consensus CDS
      CCDS27439.1
      UniProtKB/Swiss-Prot
      Q9Z1G3
      Related
      ENSMUSP00000022904.6, ENSMUST00000022904.7
      Conserved Domains (2) summary
      cd14785
      Location:5676
      V-ATPase_C; 3-helical coiled coil [structural motif]
      pfam03223
      Location:5370
      V-ATPase_C; V-ATPase subunit C

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      38661904..38692444
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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