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    Fam53c family with sequence similarity 53, member C [ Mus musculus (house mouse) ]

    Gene ID: 66306, updated on 27-Jan-2018

    Summary

    Official Symbol
    Fam53cprovided by MGI
    Official Full Name
    family with sequence similarity 53, member Cprovided by MGI
    Primary source
    MGI:MGI:1913556
    See related
    Ensembl:ENSMUSG00000034300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm21179; 2810012G03Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 33.9), ovary adult (RPKM 15.4) and 28 other tissues See more
    Orthologs

    Genomic context

    See Fam53c in Genome Data Viewer
    Location:
    18; 18 B1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (34758830..34773760)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (34918560..34933414)

    Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene cell division cycle 25C Neighboring gene ribosomal protein L29 pseudogene Neighboring gene RIKEN cDNA 2010110K18 gene Neighboring gene predicted gene 3561 Neighboring gene KDM3B lysine (K)-specific demethylase 3B Neighboring gene receptor accessory protein 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357456.1NP_001344385.1  protein FAM53C isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK044469, BC057111, CJ153142
      Conserved Domains (1) summary
      pfam15242
      Location:1307
      FAM53; Family of FAM53
    2. NM_001357457.1NP_001344386.1  protein FAM53C isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK044469, AK135712, BC057111, CJ153142
      Conserved Domains (1) summary
      pfam15242
      Location:8270
      FAM53; Family of FAM53
    3. NM_175104.5NP_780313.1  protein FAM53C isoform 1

      See identical proteins and their annotated locations for NP_780313.1

      Status: VALIDATED

      Source sequence(s)
      AC145591, AK044469, BC057111, CB244539
      Consensus CDS
      CCDS29134.1
      UniProtKB/Swiss-Prot
      Q8BXQ8
      Related
      ENSMUSP00000037034.5, ENSMUST00000049281.11
      Conserved Domains (1) summary
      pfam15242
      Location:1307
      FAM53; Family of FAM53

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

      Range
      34758830..34773760
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006526152.2XP_006526215.1  protein FAM53C isoform X1

      See identical proteins and their annotated locations for XP_006526215.1

      UniProtKB/Swiss-Prot
      Q8BXQ8
      Conserved Domains (1) summary
      pfam15242
      Location:1307
      FAM53; Family of FAM53
    2. XM_006526154.3XP_006526217.1  protein FAM53C isoform X2

      See identical proteins and their annotated locations for XP_006526217.1

      Conserved Domains (1) summary
      pfam15242
      Location:8270
      FAM53; Family of FAM53
    3. XM_006526151.3XP_006526214.1  protein FAM53C isoform X1

      UniProtKB/Swiss-Prot
      Q8BXQ8
      Related
      ENSMUSP00000095226.3, ENSMUST00000097622.3
      Conserved Domains (1) summary
      pfam15242
      Location:1307
      FAM53; Family of FAM53
    4. XM_006526153.3XP_006526216.1  protein FAM53C isoform X2

      Conserved Domains (1) summary
      pfam15242
      Location:8270
      FAM53; Family of FAM53
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