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    Smim20 small integral membrane protein 20 [ Mus musculus (house mouse) ]

    Gene ID: 66278, updated on 23-Jun-2021

    Summary

    Official Symbol
    Smim20provided by MGI
    Official Full Name
    small integral membrane protein 20provided by MGI
    Primary source
    MGI:MGI:1913528
    See related
    Ensembl:ENSMUSG00000061461
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    N28078; MITRAC7; 1110067B18Rik; 1810013D10Rik
    Expression
    Ubiquitous expression in heart adult (RPKM 41.2), kidney adult (RPKM 31.5) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Smim20 in Genome Data Viewer
    Location:
    5; 5 C1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (53424448..53435882)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (53267106..53278540)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (53658345..53669779)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30519 Neighboring gene predicted gene, 40303 Neighboring gene predicted gene 42745 Neighboring gene predicted gene, 40304

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in mitochondrial cytochrome c oxidase assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in mitochondrial cytochrome c oxidase assembly ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in mitochondrial inner membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in mitochondrial inner membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    small integral membrane protein 20
    Names
    mitochondrial translation regulation assembly intermediate of cytochrome c oxidase protein of 7 kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145433.1NP_001138905.1  small integral membrane protein 20

      See identical proteins and their annotated locations for NP_001138905.1

      Status: VALIDATED

      Source sequence(s)
      BC030079, BY077818
      Consensus CDS
      CCDS51502.1
      UniProtKB/TrEMBL
      D3Z7Q2
      Related
      ENSMUSP00000121637.3, ENSMUST00000147148.5
      Conserved Domains (1) summary
      pfam15061
      Location:459
      DUF4538; Domain of unknown function (DUF4538)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      53424448..53435882
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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